looprelax_protocols.cc File Reference

protocols that are specific to LoopRebuild More...

#include <protocols/loops/looprelax_protocols.hh>
#include <core/chemical/ResidueType.hh>
#include <core/chemical/VariantType.hh>
#include <core/conformation/Conformation.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/EnergyMap.hh>
#include <core/scoring/Energies.fwd.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/scoring/constraints/CoordinateConstraint.hh>
#include <core/scoring/func/Func.hh>
#include <core/scoring/func/HarmonicFunc.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/id/AtomID.hh>
#include <core/kinematics/MoveMap.hh>
#include <utility/file/FileName.hh>
#include <core/types.hh>
#include <core/io/pdb/pose_io.hh>
#include <core/pose/Pose.hh>
#include <basic/options/option.hh>
#include <protocols/simple_moves/BackboneMover.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/moves/MoverContainer.hh>
#include <protocols/loops/loops_main.hh>
#include <protocols/loops/loop_closure/ccd/CCDLoopClosureMover.hh>
#include <protocols/loops/Loop.hh>
#include <protocols/loops/Loops.hh>
#include <protocols/loops/loop_mover/refine/LoopMover_CCD.hh>
#include <protocols/simple_moves/FragmentMover.hh>
#include <protocols/simple_moves/FragmentMover.fwd.hh>
#include <core/kinematics/MoveMap.fwd.hh>
#include <core/fragment/FragSet.hh>
#include <basic/Tracer.hh>
#include <core/scoring/Energies.hh>
#include <numeric/model_quality/rms.hh>
#include <utility/exit.hh>
#include <numeric/random/random.hh>
#include <vector>
#include <string>
#include <sstream>
#include <basic/options/keys/loops.OptionKeys.gen.hh>
#include <basic/options/keys/constraints.OptionKeys.gen.hh>
#include <core/pose/util.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>
#include <ObjexxFCL/format.hh>
#include <core/kinematics/FoldTree.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.

Functions
static thread_local basic::Tracer	protocols::TR ("protocols.looprelax_protocols")
void	protocols::Tokenize (const std::string &str, utility::vector1< std::string > &tokens, const std::string &delimiters=" ")
	Helper function tokenizes a str. More...

Detailed Description

protocols that are specific to LoopRebuild

Detailed:

Author

Mike Tyka

James Thompson

Srivatsan Raman