CartesianMD.cc File Reference

initialization for MD More...

#include <protocols/md/CartesianMDCreator.hh>
#include <protocols/md/CartesianMD.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/pose/Pose.hh>
#include <core/id/AtomID.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/pose/symmetry/util.hh>
#include <core/scoring/constraints/CoordinateConstraint.hh>
#include <core/scoring/func/HarmonicFunc.hh>
#include <core/scoring/constraints/util.hh>
#include <basic/options/keys/constraints.OptionKeys.gen.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/EnergyMap.hh>
#include <core/scoring/ScoreType.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <core/optimization/CartesianMultifunc.hh>
#include <core/optimization/CartesianMinimizer.hh>
#include <core/optimization/CartesianMinimizerMap.hh>
#include <core/optimization/cartesian_minimize.hh>
#include <core/optimization/types.hh>
#include <core/conformation/Residue.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/AtomType.hh>
#include <core/chemical/Element.hh>
#include <core/chemical/ElementSet.hh>
#include <core/chemical/ChemicalManager.hh>
#include <utility/string_util.hh>
#include <utility/tag/Tag.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/PDBInfo.hh>
#include <utility/vector1.hh>
#include <numeric/random/random.hh>
#include <basic/Tracer.hh>
#include <ObjexxFCL/format.hh>
#include <iostream>
#include <fstream>
#include <core/io/pdb/pose_io.hh>
#include <core/scoring/rms_util.hh>
#include <sys/time.h>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::md

Functions
static thread_local basic::Tracer	protocols::md::TR ("protocols.md.Cartesian")

Detailed Description

initialization for MD

Detailed:

Author

Hahnbeom Park