util.cc File Reference

-*- mode:c++;tab-width:2;indent-tabs-mode:t;show-trailing-whitespace:t;rm-trailing-spaces:t -*- More...

#include <protocols/denovo_design/util.hh>
#include <protocols/simple_moves/MutateResidue.hh>
#include <protocols/toolbox/pose_manipulation/pose_manipulation.hh>
#include <core/pose/Pose.hh>
#include <basic/Tracer.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::denovo_design

Functions
static thread_local basic::Tracer	TR ("protocols.denovo_design.components.util")
bool	protocols::denovo_design::same_pose (core::pose::Pose const &pose1, core::pose::Pose const &pose2)
	Tells whether the two given poses are identical based on # resides and dihedrals. More...
void	protocols::denovo_design::construct_poly_ala_pose (core::pose::Pose &pose, bool const keep_disulf, std::set< core::Size > const &set1, std::set< core::Size > const &set2)
	creates a poly-ala pose where every non-gly, non-cyd, protein residue except those in the given set are converted to alanine More...
void	protocols::denovo_design::construct_poly_ala_pose (core::pose::Pose &pose, bool const keep_disulf, std::set< core::Size > const &res_set)
	creates a poly-ala pose where every non-gly, non-cyd, protein residue except those in the given set are converted to alanine More...
std::ostream &	protocols::denovo_design::operator<< (std::ostream &os, numeric::xyzMatrix< core::Real > const &mat)
	Output operators for std classes ///. More...
std::ostream &	protocols::denovo_design::operator<< (std::ostream &os, std::set< core::Size > const &set)
	outputs a set More...
std::ostream &	protocols::denovo_design::operator<< (std::ostream &os, std::list< std::string > const &list)
	outputs a list of strings More...
std::ostream &	protocols::denovo_design::operator<< (std::ostream &os, std::set< std::string > const &set)
	outputs a set More...
std::ostream &	protocols::denovo_design::operator<< (std::ostream &os, std::map< core::Size, core::Size > const &map)
	outputs a map More...
std::ostream &	protocols::denovo_design::operator<< (std::ostream &os, std::map< std::string, core::Size > const &map)
	outputs a map More...
std::ostream &	protocols::denovo_design::operator<< (std::ostream &os, std::map< std::pair< std::string, std::string >, core::Size > const &map)
	outputs a map More...
std::ostream &	protocols::denovo_design::operator<< (std::ostream &os, std::map< std::string, core::Real > const &map)
	outputs a map More...

Detailed Description

-*- mode:c++;tab-width:2;indent-tabs-mode:t;show-trailing-whitespace:t;rm-trailing-spaces:t -*-

util functions for denovo design of structures

Author

Tom Linsky

Function Documentation

static thread_local basic::Tracer TR ( "protocols.denovo_design.components.util"  )

static