- l -

• L1ScoringScheme() : core::sequence::L1ScoringScheme
• label() : core::environment::LocalPosition , core::kinematics::Edge
• landing_atom() : core::scoring::loop_graph::LoopScoreInfo
• landing_domain() : core::scoring::loop_graph::Loop
• landing_pos() : core::scoring::loop_graph::Loop
• last() : core::graph::EdgeList
• last_backbone_atom() : core::chemical::ResidueType , core::conformation::Residue
• last_controlling_chi() : core::chemical::ResidueType
• last_independent_residue() : core::conformation::symmetry::SymmetryInfo
• last_nonempty_bin() : core::scoring::saxs::DistanceHistogram
• last_residue() : core::conformation::parametric::Parameters
• last_section() : core::fragment::picking_old::vall::VallLibrary
• lazy_ig() : core::pack::task::PackerTask , core::pack::task::PackerTask_
• LazyEdge() : core::pack::interaction_graph::LazyEdge
• LazyInteractionGraph() : core::pack::interaction_graph::LazyInteractionGraph
• LazyNode() : core::pack::interaction_graph::LazyNode
• LazySilentFilePoseInputStream() : core::import_pose::pose_stream::LazySilentFilePoseInputStream
• lb() : core::scoring::constraints::BoundFunc
• lbfgs() : core::optimization::Minimizer
• leaves_of_jump() : core::conformation::symmetry::SymmData
• LeeRichards() : core::scoring::packstat::LeeRichards
• left_cdf() : core::scoring::Ramachandran2B
• left_cdf_for_torsion_bin() : core::scoring::Ramachandran2B
• LeGrandSasa() : core::scoring::sasa::LeGrandSasa
• length() : core::environment::SequenceAnnotation , core::fragment::Frame , core::scoring::loop_graph::LoopScoreInfo , core::sequence::AnnotatedSequence , core::sequence::CompositeSequence , core::sequence::Sequence , core::sequence::SequenceAlignment
• length_dependent_srbb() : core::scoring::hbonds::HBondOptions
• length_dependent_srbb_highscale() : core::scoring::hbonds::HBondOptions
• length_dependent_srbb_lowscale() : core::scoring::hbonds::HBondOptions
• length_dependent_srbb_maxlength() : core::scoring::hbonds::HBondOptions
• length_dependent_srbb_minlength() : core::scoring::hbonds::HBondOptions
• length_parameters() : core::scoring::methods::ResidueCartBondedParameters
• LengthChecker() : core::environment::LengthChecker
• LengthEvent() : core::conformation::signals::LengthEvent
• LengthEventCollector() : core::pose::datacache::LengthEventCollector
• LengthGen() : core::fragment::picking_old::vall::gen::LengthGen
• Librarian() : core::fragment::picking_old::concepts::Librarian< Bookmark, ExtentEvaluator, ExtentGenerator, Library >
• Library() : core::fragment::picking_old::concepts::Library< Books >
• limit() : core::scoring::func::TopOutFunc
• Line() : core::sequence::Line
• LinearChainbreakEnergy() : core::scoring::methods::LinearChainbreakEnergy
• LinearMemEdge() : core::pack::interaction_graph::LinearMemEdge
• LinearMemNode() : core::pack::interaction_graph::LinearMemNode
• LinearMemoryInteractionGraph() : core::pack::interaction_graph::LinearMemoryInteractionGraph
• LinearPenaltyFunction() : core::scoring::func::LinearPenaltyFunction
• LineMinimizationAlgorithm() : core::optimization::LineMinimizationAlgorithm
• link_torsion_vectors() : core::optimization::MinimizerMap , core::optimization::symmetry::SymMinimizerMap , core::pack::scmin::AtomTreeSCMinMinimizerMap , core::pack::scmin::CartSCMinMinimizerMap , core::pack::scmin::SCMinMinimizerMap
• link_vectors() : core::optimization::DOF_Node
• linmem_ig() : core::pack::task::PackerTask , core::pack::task::PackerTask_
• linmem_ig_history_size() : core::pack::task::PackerTask , core::pack::task::PackerTask_
• linmin() : core::optimization::Minimizer
• lipid_acc_data() : core::conformation::membrane::MembraneInfo
• lipid_burial() : core::conformation::membrane::LipidAccInfo
• lipid_exposure() : core::conformation::membrane::LipidAccInfo
• LipidAccInfo() : core::conformation::membrane::LipidAccInfo
• LipidBurial() : core::scoring::MembraneTopology
• LipidExposure() : core::scoring::MembraneTopology
• LipoDefined() : core::scoring::MembraneTopology
• list() : core::scoring::Hairpins
• lj_radius() : core::chemical::AtomType , core::chemical::MMAtomType , core::scoring::etable::Etable , core::scoring::etable::MembEtable
• lj_three_bond_radius() : core::chemical::MMAtomType
• lj_three_bond_wdepth() : core::chemical::MMAtomType
• lj_wdepth() : core::chemical::AtomType , core::chemical::MMAtomType , core::scoring::etable::Etable
• ljatr() : core::scoring::etable::Etable
• ljrep() : core::scoring::etable::Etable
• LK_BallEnergy() : core::scoring::methods::LK_BallEnergy
• lk_dgfree() : core::chemical::AtomType , core::scoring::etable::Etable , core::scoring::etable::MembEtable
• lk_dgrefce() : core::scoring::etable::MembEtable
• LK_hack() : core::scoring::methods::LK_hack
• lk_inv_lambda2() : core::scoring::etable::Etable
• lk_lambda() : core::chemical::AtomType , core::scoring::etable::Etable , core::scoring::etable::MembEtable
• LK_PolarNonPolarEnergy() : core::scoring::methods::LK_PolarNonPolarEnergy
• LK_SigmoidalFunc() : core::scoring::methods::LK_SigmoidalFunc
• lk_solv_energy_and_deriv() : core::scoring::etable::Etable
• lk_volume() : core::chemical::AtomType , core::scoring::etable::Etable , core::scoring::etable::MembEtable
• LKB_ResidueInfo() : core::scoring::methods::LKB_ResidueInfo
• LKB_ResiduesInfo() : core::scoring::methods::LKB_ResiduesInfo
• LKB_ResPairMinData() : core::scoring::methods::LKB_ResPairMinData
• load_APBS_potential() : core::scoring::PoissonBoltzmannPotential
• load_bin_params() : core::scoring::bin_transitions::BinTransitionCalculator
• load_ff() : core::scoring::saxs::FormFactorManager
• load_ff_from_db() : core::scoring::saxs::FormFactorManager
• load_fragment_lookup() : core::indexed_structure_store::StructureStoreManager
• load_larmord_neighbor_atoms() : core::scoring::rna::chemical_shift::RNA_ChemicalShiftPotential
• load_larmord_parameters() : core::scoring::rna::chemical_shift::RNA_ChemicalShiftPotential
• load_larmord_reference_shifts() : core::scoring::rna::chemical_shift::RNA_ChemicalShiftPotential
• load_larmord_weights() : core::scoring::rna::chemical_shift::RNA_ChemicalShiftPotential
• load_menv_info() : core::scoring::membrane::MembraneData
• load_phi_theta_bins() : core::scoring::SecondaryStructurePotential
• load_score_tables() : core::scoring::dna::DNA_BasePotential
• load_weights_file() : core::scoring::ScoreFunctionFactory
• loader_type() : core::chemical::ResidueLoaderCreator , core::conformation::symmetry::SymmDataLoaderCreator , core::import_pose::PoseFromPDBLoaderCreator , core::io::silent::SilentFileLoaderCreator , core::scoring::electron_density::ElectronDensityLoaderCreator , core::scoring::fiber_diffraction::FiberDiffractionLoaderCreator
• loadFiberDiffractionData() : core::scoring::fiber_diffraction::FiberDiffraction
• local2global() : core::kinematics::Stub
• LocalCoordinateConstraint() : core::scoring::constraints::LocalCoordinateConstraint
• LocalCoordinateConstraintCreator() : core::scoring::constraints::LocalCoordinateConstraintCreator
• LocalPosition() : core::environment::LocalPosition
• locate_command() : core::pack::task::ResfileContents
• locate_resid() : core::pack::task::ResfileContents
• long_range_container() : core::scoring::Energies
• long_range_energies_begin() : core::scoring::ScoreFunction
• long_range_energies_end() : core::scoring::ScoreFunction
• long_range_interactions_exist() : core::pack::interaction_graph::OnTheFlyEdge , core::pack::interaction_graph::SymmOnTheFlyEdge
• long_range_type() : core::scoring::constraints::ConstraintsEnergy , core::scoring::disulfides::CentroidDisulfideEnergy , core::scoring::disulfides::DisulfideMatchingEnergy , core::scoring::disulfides::FullatomDisulfideEnergy , core::scoring::electron_density::ElecDensAllAtomCenEnergy , core::scoring::electron_density::ElecDensCenEnergy , core::scoring::electron_density::ElecDensEnergy , core::scoring::electron_density::FastDensEnergy , core::scoring::electron_density::PattersonCorrEnergy , core::scoring::electron_density_atomwise::ElecDensAtomwiseEnergy , core::scoring::methods::CartesianBondedEnergy , core::scoring::methods::dfire::DFIRE_Energy , core::scoring::methods::GenBornEnergy , core::scoring::methods::LongRangeTwoBodyEnergy , core::scoring::methods::PoissonBoltzmannEnergy , core::scoring::methods::Rama2BOffsetEnergy , core::scoring::rna::RNA_SuiteEnergy , core::scoring::sym_e::symEnergy
• longestSide() : core::grid::CartGrid< T >
• LongRangeTwoBodyEnergy() : core::scoring::methods::LongRangeTwoBodyEnergy
• look_for_cycles_recursively() : core::scoring::loop_graph::LoopGraph
• lookback() : core::scoring::methods::VallLookbackPotential
• lookback_db() : core::scoring::methods::VallLookbackPotential
• lookbackRegion() : core::scoring::methods::VallLookbackPotential
• lookup() : core::pose::metrics::EnergyDependentCalculator , core::pose::metrics::PoseMetricCalculator , core::pose::metrics::simple_calculators::InterfaceDefinitionCalculator , core::pose::metrics::simple_calculators::InterfaceDeltaEnergeticsCalculator , core::pose::metrics::simple_calculators::InterfaceNeighborDefinitionCalculator , core::pose::metrics::simple_calculators::InterfaceSasaDefinitionCalculator , core::pose::metrics::simple_calculators::SasaCalculator2 , core::pose::metrics::simple_calculators::SasaCalculatorLegacy , core::pose::metrics::StructureDependentCalculator , core::scoring::mm::MMBondAngleLibrary , core::scoring::mm::MMBondAngleResidueTypeParamSet , core::scoring::mm::MMBondLengthLibrary , core::scoring::mm::MMLJLibrary , core::scoring::mm::MMTorsionLibrary
• lookup_angle() : core::scoring::methods::IdealParametersDatabase
• lookup_angle_legacy() : core::scoring::methods::IdealParametersDatabase
• lookup_bondangle_buildideal() : core::scoring::methods::IdealParametersDatabase
• lookup_bondlength_buildideal() : core::scoring::methods::IdealParametersDatabase
• lookup_closest_fragment() : core::indexed_structure_store::FragmentLookup
• lookup_closest_pose_fragments() : core::indexed_structure_store::FragmentLookup
• lookup_fragment() : core::indexed_structure_store::FragmentLookup
• lookup_length() : core::scoring::methods::IdealParametersDatabase
• lookup_length_legacy() : core::scoring::methods::IdealParametersDatabase
• lookup_pose_fragments() : core::indexed_structure_store::FragmentLookup
• lookup_three_bond() : core::scoring::mm::MMLJLibrary
• lookup_torsion() : core::scoring::methods::IdealParametersDatabase
• lookup_torsion_legacy() : core::scoring::methods::IdealParametersDatabase
• loop() : core::optimization::GA_Minimizer
• Loop() : core::scoring::loop_graph::Loop
• loop() : core::scoring::loop_graph::LoopCycle
• loop_fraction() : core::fragment::SecondaryStructure
• loop_incident() : core::graph::Node
• loop_score_info() : core::scoring::loop_graph::LoopGraph
• loop_suites() : core::scoring::loop_graph::LoopGraph
• LoopCloseEnergy() : core::scoring::loop_graph::LoopCloseEnergy
• LoopCycle() : core::scoring::loop_graph::LoopCycle
• LoopGraph() : core::scoring::loop_graph::LoopGraph
• loops() : core::scoring::loop_graph::LoopCycle
• LoopScoreInfo() : core::scoring::loop_graph::LoopScoreInfo
• low_energy_conformers_are_known() : core::chemical::RingConformerSet
• low_temp() : core::pack::task::PackerTask , core::pack::task::PackerTask_
• lower_bound() : core::scoring::PoissonBoltzmannPotential
• lower_connect() : core::chemical::ResidueType , core::conformation::Residue
• lower_connect_angle_params() : core::scoring::methods::ResidueCartBondedParameters
• lower_connect_atom() : core::chemical::ResidueType , core::conformation::Residue
• lower_connect_id() : core::chemical::ResidueType
• lower_edge_list_begin() : core::graph::Node
• lower_edge_list_end() : core::graph::Node
• lower_neighbor_id() : core::scoring::constraints::CstResNeighbConstIterator , core::scoring::constraints::CstResNeighbIterator , core::scoring::DenseNeighborConstIterator , core::scoring::DenseNeighborIterator , core::scoring::disulfides::CentroidDisulfideEnergyContainer , core::scoring::disulfides::CentroidDisulfideNeighborConstIterator , core::scoring::disulfides::CentroidDisulfideNeighborIterator , core::scoring::disulfides::DisulfideMatchingEnergyContainer , core::scoring::disulfides::DisulfideMatchingNeighborConstIterator , core::scoring::disulfides::DisulfideMatchingNeighborIterator , core::scoring::disulfides::DisulfResNeighbConstIterator , core::scoring::disulfides::DisulfResNeighbIterator , core::scoring::disulfides::FullatomDisulfideEnergyContainer , core::scoring::OneToAllNeighborConstIterator , core::scoring::OneToAllNeighborIterator , core::scoring::PeptideBondedNeighborConstIterator , core::scoring::PeptideBondedNeighborIterator , core::scoring::ResidueNeighborConstIterator , core::scoring::ResidueNeighborIterator
• lr() : core::conformation::PseudoBond
• LR_AtomData() : core::scoring::packstat::LR_AtomData
• lr_conn_id() : core::conformation::PseudoBond
• LR_MP_AtomData() : core::scoring::packstat::LR_MP_AtomData
• lr_resconnid() : core::conformation::PseudoBond