- h -

• h2o_hbond_score_1way() : core::scoring::WaterAdductHBondPotential
• HackAroEnergy() : core::scoring::hackaro::HackAroEnergy
• Hairpin() : core::scoring::Hairpin
• hairpin_killing_score() : core::scoring::SecondaryStructurePotential
• Hairpins() : core::scoring::Hairpins
• hairpins() : core::scoring::SS_Killhairpins_Info
• handle_bumped_recent_history_state_for_node() : core::pack::interaction_graph::LinearMemEdge , core::pack::interaction_graph::SymmLinearMemEdge , core::pack::interaction_graph::SymmMinimalistEdge
• hard_crossover() : core::scoring::etable::etrie::TrieCountPairGeneric
• HarmonicFunc() : core::scoring::func::HarmonicFunc
• Haro_index() : core::chemical::ResidueType , core::conformation::Residue
• has() : core::chemical::ResidueType , core::conformation::Residue , core::id::AtomID_Map< T > , core::id::BondID , core::id::NamedAtomID_Map< T > , core::kinematics::AtomTree , core::pack::rotamer_set::RotamerLinks , core::scoring::constraints::ResidueConstraints
• has_another_matrix() : core::scoring::bin_transitions::BinTransitionCalculator
• has_another_pose() : core::import_pose::pose_stream::ExtendedPoseInputStream , core::import_pose::pose_stream::LazySilentFilePoseInputStream , core::import_pose::pose_stream::MetaPoseInputStream , core::import_pose::pose_stream::PDBPoseInputStream , core::import_pose::pose_stream::PoseInputStream , core::import_pose::pose_stream::SilentFilePoseInputStream
• has_atom() : core::chemical::AtomTypeSet
• has_atom_info() : core::kinematics::Edge
• has_behavior() : core::pack::task::PackerTask , core::pack::task::PackerTask_ , core::pack::task::ResidueLevelTask , core::pack::task::ResidueLevelTask_
• has_cache() : core::scoring::methods::PBLifetimeCache
• has_chainbreak() : core::util::ChainbreakUtil
• has_comment() : core::io::silent::SilentStruct
• has_common_pairing() : core::scoring::dssp::StrandPairing
• has_constraints() : core::scoring::constraints::ConstraintSet
• has_conventional_residue() : core::pose::full_model_info::FullModelParameters
• has_coordinates() : core::fragment::BBTorsionSRFD
• has_custom_variant_types() : core::chemical::ResidueProperties
• has_cut() : core::environment::FoldTreeSketch
• has_cycle() : core::environment::FoldTreeSketch::Node
• has_dof() : core::conformation::symmetry::SymDof , core::pose::Pose
• has_dof_constraints() : core::scoring::constraints::ConstraintSet
• has_energy() : core::io::silent::SilentStruct
• has_energy_method() : core::scoring::ScoringManager
• has_exocyclic_linkage() : core::chemical::carbohydrates::CarbohydrateInfo
• has_extra_parameter() : core::chemical::AtomTypeSet
• has_incomplete_connection() : core::conformation::Residue
• has_intra_residue_constraints() : core::scoring::constraints::ConstraintSet
• has_jump() : core::environment::FoldTreeSketch
• has_jump_access() : core::environment::DofPassport
• has_jump_neighbor() : core::environment::FoldTreeSketch::Node
• has_just_simple_cycles() : core::scoring::loop_graph::LoopGraph
• has_lower_connect() : core::conformation::Residue
• has_method_weights() : core::scoring::methods::EnergyMethodOptions
• has_name() : core::chemical::ResidueTypeSet
• has_name3() : core::chemical::ResidueTypeSet
• has_neighbor() : core::environment::FoldTreeSketch::Node
• has_non_residue_pair_constraints() : core::scoring::constraints::ConstraintSet
• has_nonzero_weight() : core::scoring::ScoreFunction
• has_orbital() : core::chemical::ResidueType
• has_orbitals() : core::chemical::Atom
• has_pairing() : core::scoring::dssp::StrandPairing , core::scoring::dssp::StrandPairingSet
• has_parent_remark() : core::io::silent::SilentStruct
• has_passport() : core::conformation::Conformation
• has_peptide_neighbor() : core::environment::FoldTreeSketch::Node
• has_profile() : core::fragment::picking_old::vall::VallResidue
• has_property() : core::chemical::ResidueProperties , core::chemical::ResidueType , core::conformation::Residue , core::scoring::bin_transitions::BinTransitionData
• has_pseudobonds() : core::scoring::trie::CPDataCorrespondence
• has_range1() : core::conformation::symmetry::SymDof
• has_range1_lower() : core::conformation::symmetry::SymDof
• has_range1_upper() : core::conformation::symmetry::SymDof
• has_range2() : core::conformation::symmetry::SymDof
• has_range2_lower() : core::conformation::symmetry::SymDof
• has_range2_upper() : core::conformation::symmetry::SymDof
• has_reactivities() : core::io::rna::RNA_DataReader
• has_ref_pose() : core::import_pose::atom_tree_diffs::AtomTreeDiff
• has_ref_tag() : core::import_pose::atom_tree_diffs::AtomTreeDiff
• has_residue_pair_constraints() : core::scoring::constraints::ConstraintSet
• has_residue_type_set() : core::chemical::ChemicalManager
• has_sc_orbitals() : core::chemical::ResidueType , core::conformation::Residue
• has_seq_label() : core::environment::SequenceAnnotation
• has_shared_silent_data() : core::io::silent::SilentFileData
• has_sibling() : core::scoring::trie::TrieNode< AT, CPDATA >
• has_silent_struct_type() : core::io::silent::SilentStructFactory
• has_tag() : core::import_pose::atom_tree_diffs::AtomTreeDiff , core::io::silent::SilentFileData
• has_type() : core::pack::task::operation::ResFilterFactory , core::pack::task::operation::ResLvlTaskOperationFactory , core::pack::task::operation::TaskOperationFactory , core::pack::task::residue_selector::ResidueSelectorFactory
• has_upper_connect() : core::conformation::Residue
• has_variant_type() : core::chemical::ResidueType , core::conformation::Residue
• has_waters() : core::scoring::methods::LKB_ResidueInfo
• has_zero_weight() : core::scoring::ScoreFunction
• hASA_energy() : core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > , core::pack::interaction_graph::SurfaceNode< V, E, G >
• hASA_patch_energy() : core::pack::interaction_graph::SurfacePotential
• hash_recent_history() : core::pack::annealer::FASTERAnnealer
• hash_to_labal() : core::scoring::motif::ResPairMotifMetaBinner
• hash_value() : core::kinematics::FoldTree , core::scoring::dssp::StrandPairing
• hasher() : core::scoring::motif::MotifHash
• have_motif_set_named() : core::scoring::motif::MotifHashManager
• have_motifs() : core::scoring::motif::MotifHashManager
• have_params() : core::scoring::packing::HolesParams , core::scoring::packing::HolesParamsRes
• havesurf() : core::scoring::packing::PoseBalls
• hb_acc_chem_type() : core::scoring::hbonds::hbtrie::HBAtom
• hb_bb() : core::scoring::motif::ResPairMotif
• hb_bb_sc() : core::scoring::motif::ResPairMotif
• hb_chem_type() : core::scoring::hbonds::hbtrie::HBAtom
• hb_don_chem_type() : core::scoring::hbonds::hbtrie::HBAtom
• hb_sc() : core::scoring::motif::ResPairMotif
• HBAtom() : core::scoring::hbonds::hbtrie::HBAtom
• HBCPData() : core::scoring::hbonds::hbtrie::HBCPData
• HBEvalTuple() : core::scoring::hbonds::HBEvalTuple
• HBFadeInterval_from_name() : core::scoring::hbonds::HBondDatabase
• HBond() : core::scoring::hbonds::HBond
• hbond() : core::scoring::hbonds::HBondSet
• hbond_cop() : core::scoring::hbonds::HBondSet
• hbond_derivs_1way() : core::scoring::hbonds::HBondEnergy
• hbond_energy_comparer() : core::scoring::hbonds::HBond
• hbond_energy_shift() : core::scoring::hbonds::HBondOptions
• hbond_options() : core::scoring::hbonds::HBondSet , core::scoring::methods::EnergyMethodOptions
• HBondDatabase() : core::scoring::hbonds::HBondDatabase
• HBondEnergy() : core::scoring::hbonds::HBondEnergy
• HBondOptions() : core::scoring::hbonds::HBondOptions
• HBondResidueMinData() : core::scoring::hbonds::HBondResidueMinData
• HBondResPairMinData() : core::scoring::hbonds::HBondResPairMinData
• HBondSet() : core::scoring::hbonds::HBondSet
• HBPoly1D_from_name() : core::scoring::hbonds::HBondDatabase
• header_information() : core::io::pdb::FileData , core::pose::PDBInfo
• HeaderInformation() : core::io::pdb::HeaderInformation
• heavy_atom_with_hydrogens() : core::chemical::ResidueType
• heavy_atom_with_polar_hydrogens() : core::chemical::ResidueType
• heavy_atoms() : core::chemical::ResidueType
• heavyatom_has_polar_hydrogens() : core::chemical::Atom , core::chemical::ResidueType , core::conformation::Residue
• heavyatom_heavyatom_energy() : core::scoring::elec::FA_ElecEnergy , core::scoring::etable::AnalyticEtableEvaluator , core::scoring::etable::TableLookupEvaluator , core::scoring::hbonds::HBondEnergy , core::scoring::methods::MMLJEnergyInter , core::scoring::vdwaals::VDWTrieEvaluator
• heavyatom_hydrogenatom_energy() : core::scoring::elec::FA_ElecEnergy , core::scoring::etable::AnalyticEtableEvaluator , core::scoring::etable::TableLookupEvaluator , core::scoring::hbonds::HBondEnergy , core::scoring::methods::MMLJEnergyInter , core::scoring::vdwaals::VDWTrieEvaluator
• heavyatom_is_an_acceptor() : core::chemical::ResidueType , core::conformation::Residue
• HeavyAtomFilter() : core::chemical::HeavyAtomFilter
• heavyAtoms_end() : core::conformation::Residue
• HeavyAtomWithHydrogensFilter() : core::chemical::HeavyAtomWithHydrogensFilter
• HeavyAtomWithPolarHydrogensFilter() : core::chemical::HeavyAtomWithPolarHydrogensFilter
• Helices() : core::scoring::Helices
• helices() : core::scoring::SS_Info
• helix_end() : core::scoring::SecondaryStructurePotential
• helix_fraction() : core::fragment::SecondaryStructure
• helix_id() : core::scoring::MembraneTopology
• helper() : core::scoring::constraints::AngleConstraint , core::scoring::constraints::DihedralConstraint
• hetero_atom_line() : core::scoring::packstat::CavityBall
• high_temp() : core::pack::task::PackerTask , core::pack::task::PackerTask_
• hits1() : core::scoring::motif::MotifHits
• hits2() : core::scoring::motif::MotifHits
• ho2prime_index() : core::chemical::rna::RNA_ResidueType
• hokey_template_workaround() : core::pack::dunbrack::SingleResidueDunbrackLibrary , core::pack::dunbrack::SingleResiduePeptoidLibrary
• HolesEnergy() : core::scoring::packing::HolesEnergy
• HolesEnergyRes() : core::scoring::packing::HolesEnergyRes
• HolesParams() : core::scoring::packing::HolesParams
• HolesParamsRes() : core::scoring::packing::HolesParamsRes
• HolesResult() : core::scoring::packing::HolesResult
• hoog_edge_paired() : core::scoring::rna::data::RNA_DMS_LowResolutionPotential
• hpatch_score() : core::pack::interaction_graph::SurfacePotential
• HPatchBackgroundEdge() : core::pack::interaction_graph::HPatchBackgroundEdge< V, E, G >
• HPatchBackgroundNode() : core::pack::interaction_graph::HPatchBackgroundNode< V, E, G >
• HPatchEdge() : core::pack::interaction_graph::HPatchEdge< V, E, G >
• HPatchEnergy() : core::pack::interaction_graph::HPatchEnergy
• HPatchInteractionGraph() : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
• HPatchNode() : core::pack::interaction_graph::HPatchNode< V, E, G >
• Hpol_index() : core::chemical::ResidueType , core::conformation::Residue
• Hpos_apolar() : core::chemical::ResidueType , core::conformation::Residue
• Hpos_polar() : core::chemical::ResidueType , core::conformation::Residue
• Hpos_polar_sc() : core::chemical::ResidueType , core::conformation::Residue
• hs_dp_initializer() : core::scoring::SecondaryStructurePotential
• hspair() : core::scoring::SecondaryStructurePotential
• hybridization() : core::chemical::AtomType , core::chemical::orbitals::OrbitalType
• hybridization_rank() : core::chemical::gasteiger::PossibleAtomTypesForAtom
• hybridization_type_from_name() : core::scoring::hbonds::HBondTypeManager
• HybridVDW_Energy() : core::scoring::methods::HybridVDW_Energy
• hydrogen_interaction_cutoff() : core::scoring::elec::FA_ElecEnergy , core::scoring::methods::MMLJEnergyInter
• hydrogen_interaction_cutoff2() : core::scoring::elec::FA_ElecEnergy , core::scoring::etable::BaseEtableEnergy< Derived > , core::scoring::etable::Etable , core::scoring::etable::EtableEvaluator , core::scoring::etable::MembEtable , core::scoring::hbonds::HBondEnergy , core::scoring::methods::MMLJEnergyInter , core::scoring::vdwaals::VDWTrieEvaluator
• hydrogenatom_heavyatom_energy() : core::scoring::elec::FA_ElecEnergy , core::scoring::etable::AnalyticEtableEvaluator , core::scoring::etable::TableLookupEvaluator , core::scoring::hbonds::HBondEnergy , core::scoring::methods::MMLJEnergyInter , core::scoring::vdwaals::VDWTrieEvaluator
• hydrogenatom_hydrogenatom_energy() : core::scoring::elec::FA_ElecEnergy , core::scoring::etable::AnalyticEtableEvaluator , core::scoring::etable::TableLookupEvaluator , core::scoring::hbonds::HBondEnergy , core::scoring::methods::MMLJEnergyInter , core::scoring::vdwaals::VDWTrieEvaluator
• HydrogenAtomFilter() : core::chemical::HydrogenAtomFilter
• hydrogens() : core::chemical::ResidueType