selection.cc File Reference

pose residue selections More...

#include <core/pose/selection.hh>
#include <core/types.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/conformation/Conformation.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBPoseMap.hh>
#include <core/pose/PDBInfo.hh>
#include <core/scoring/ScoreFunction.hh>
#include <boost/foreach.hpp>
#include <basic/Tracer.hh>
#include <utility/string_util.hh>
#include <utility/vector1.hh>
#include <utility/tag/Tag.hh>
#include <utility/vector0.hh>
#include <ObjexxFCL/string.functions.hh>

Namespaces
	core
	A class for reading in the atom type properties.
	core::pose

Functions
static thread_local basic::Tracer	TR ("core.pose.selection")
core::Size	core::pose::get_resnum (utility::tag::TagCOP tag_ptr, core::pose::Pose const &pose, std::string const &prefix)
	a convenience function to test whether the user has specified pdb numbering rather than rosetta numbering. More...
core::Size	core::pose::parse_resnum (std::string const &resnum, core::pose::Pose const &pose)
	Extracts a residue number from a string. Recognizes two forms of numbering: More...
utility::vector1< core::Size >	core::pose::parse_selection_block (std::string const &sele, core::pose::Pose const &pose)
	Extracts residue numbers from a 'selection'. Recognizes two forms of numbering: More...
vector1< Size >	core::pose::get_resnum_list (utility::tag::TagCOP tag_ptr, string const &tag, pose::Pose const &pose)
	Extracts a list of residue numbers from a tag. More...
set< Size >	core::pose::get_resnum_list (std::string const str, core::pose::Pose const &pose)
	returns a resnum list directly from a string More...
utility::vector1< Size >	core::pose::get_resnum_list_ordered (std::string const str, core::pose::Pose const &pose)
	returns a resnum list directly from a string, preserving order More...

Detailed Description

pose residue selections

Author

Sarel Fleishman (sarel.nosp@m.f@u..nosp@m.washi.nosp@m.ngto.nosp@m.n.edu)

Jacob Corn (jecor.nosp@m.n@u..nosp@m.washi.nosp@m.ngto.nosp@m.n.edu)

Rocco Moretti (rmore.nosp@m.tti@.nosp@m.u.was.nosp@m.hing.nosp@m.ton.e.nosp@m.du)

Eva-Maria Strauch (evas0.nosp@m.1@uw.nosp@m..edu)

Function Documentation

static thread_local basic::Tracer TR ( "core.pose.selection"  )

static