CartesianSampler.cc File Reference

#include <core/scoring/cryst/PhenixInterface.hh>
#include <protocols/hybridization/HybridizeProtocolCreator.hh>
#include <protocols/hybridization/CartesianSampler.hh>
#include <protocols/hybridization/FragmentBiasAssigner.hh>
#include <protocols/hybridization/util.hh>
#include <core/pose/datacache/CacheableDataType.hh>
#include <basic/datacache/BasicDataCache.hh>
#include <protocols/moves/Mover.fwd.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/moves/MoverContainer.hh>
#include <protocols/simple_moves/SwitchResidueTypeSetMover.hh>
#include <protocols/relax/util.hh>
#include <protocols/simple_moves/ReturnSidechainMover.hh>
#include <protocols/simple_moves/FragmentMover.hh>
#include <protocols/simple_moves/symmetry/SetupNCSMover.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/comparative_modeling/coord_util.hh>
#include <basic/datacache/DataMap.hh>
#include <protocols/loops/loops_main.hh>
#include <protocols/loops/Loops.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/jd2/JobDistributorFactory.hh>
#include <protocols/jd2/util.hh>
#include <protocols/jd2/JobOutputter.hh>
#include <protocols/jd2/SilentFileJobOutputter.hh>
#include <protocols/jd2/Job.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/pack/task/TaskFactory.hh>
#include <protocols/simple_moves/PackRotamersMover.hh>
#include <protocols/simple_moves/symmetry/SymPackRotamersMover.hh>
#include <protocols/simple_moves/RotamerTrialsMover.hh>
#include <core/scoring/symmetry/SymmetricScoreFunction.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/electron_density/ElectronDensity.hh>
#include <core/scoring/Energies.hh>
#include <core/sequence/util.hh>
#include <core/sequence/Sequence.hh>
#include <core/id/SequenceMapping.hh>
#include <core/sequence/SequenceAlignment.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/Remarks.hh>
#include <core/pose/selection.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/import_pose/import_pose.hh>
#include <core/io/pdb/pose_io.hh>
#include <core/io/pdb/file_data.hh>
#include <utility/io/ozstream.hh>
#include <core/pose/util.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/constraints/CoordinateConstraint.hh>
#include <core/scoring/func/HarmonicFunc.hh>
#include <core/scoring/constraints/AtomPairConstraint.hh>
#include <core/scoring/func/ScalarWeightedFunc.hh>
#include <core/scoring/func/SOGFunc.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <core/optimization/CartesianMinimizer.hh>
#include <core/scoring/methods/EnergyMethodOptions.hh>
#include <core/scoring/func/USOGFunc.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/pack_rotamers.hh>
#include <core/conformation/util.hh>
#include <core/fragment/ConstantLengthFragSet.hh>
#include <core/fragment/FragmentIO.hh>
#include <core/fragment/FragSet.hh>
#include <core/fragment/Frame.hh>
#include <core/fragment/FrameIterator.hh>
#include <core/fragment/FragData.hh>
#include <core/pose/symmetry/util.hh>
#include <core/optimization/symmetry/SymAtomTreeMinimizer.hh>
#include <core/conformation/symmetry/SymmetricConformation.hh>
#include <core/conformation/symmetry/SymmetryInfo.hh>
#include <utility/excn/Exceptions.hh>
#include <utility/file/file_sys_util.hh>
#include <numeric/random/random.hh>
#include <numeric/xyzVector.hh>
#include <numeric/xyz.functions.hh>
#include <numeric/model_quality/rms.hh>
#include <numeric/random/WeightedSampler.hh>
#include <basic/options/option.hh>
#include <basic/options/option_macros.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/cm.OptionKeys.gen.hh>
#include <utility/tag/Tag.hh>
#include <utility/string_util.hh>
#include <basic/Tracer.hh>
#include <boost/unordered/unordered_map.hpp>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::hybridization

Functions
static thread_local basic::Tracer	protocols::hybridization::TR ("protocols.hybridization.CartesianSampler")

Detailed Description

Author

Yifan Song

Frank DiMaio

Ray Wang