hybridization Directory Reference

Directory dependency graph for hybridization:

Files
file	AllResiduesChanged.hh
file	BackboneTorsionPerturbation.cc
file	BackboneTorsionPerturbation.hh
	Declaration of the MoverCreator class for the BackboneTorsionPerturbation.
file	BackboneTorsionPerturbationCreator.hh
file	BackboneTorsionSampler.cc
file	BackboneTorsionSampler.hh
	Declaration of the MoverCreator class for the BackboneTorsionSampler.
file	BackboneTorsionSamplerCreator.hh
file	CartesianHybridize.cc
file	CartesianHybridize.fwd.hh
file	CartesianHybridize.hh
file	CartesianSampler.cc
file	CartesianSampler.fwd.hh
file	CartesianSampler.hh
file	ChunkTrialMover.cc
	Wrapper for InsertChunkMover. It can take a random template and steal coordinates of all chunks or a random one.
file	ChunkTrialMover.fwd.hh
file	ChunkTrialMover.hh
	Wrapper for InsertChunkMover. It can take a random template and steal coordinates of all chunks or a random one.
file	DDomainParse.cc
	A reimplementation of DDomain domain parsing algorithm, Protein Sci.16,947–955 (2007)
file	DDomainParse.hh
	A reimplementation of DDomain domain parsing algorithm, Protein Sci.16,947–955 (2007)
file	DomainAssembly.cc
	Domain Assembly.
file	DomainAssembly.fwd.hh
file	DomainAssembly.hh
file	FoldTreeHybridize.cc
	Align a random jump to template.
file	FoldTreeHybridize.fwd.hh
file	FoldTreeHybridize.hh
	Align a random jump to template.
file	FragmentBiasAssigner.cc
	take out the "compute_frag_bias()" from CartesianSampler
file	FragmentBiasAssigner.hh
	take out the "compute_frag_bias()" from CartesianSampler
file	HybridizeFoldtreeDynamic.cc
	A mover to dynamically manipulate fold tree during the template hybridization sampling.
file	HybridizeFoldtreeDynamic.fwd.hh
file	HybridizeFoldtreeDynamic.hh
file	HybridizeProtocol.cc
file	HybridizeProtocol.fwd.hh
file	HybridizeProtocol.hh
	Add constraints to the current pose conformation.
file	HybridizeProtocolCreator.hh
file	InsertChunkMover.cc
	Align a random jump to template.
file	InsertChunkMover.hh
	Align a random jump to template.
file	MRMover.cc
file	MRMover.hh
file	TemplateHistory.cc
file	TemplateHistory.fwd.hh
file	TemplateHistory.hh
file	TMalign.hh
	A reimplementation of TM-align algorithm.
file	util.cc
	Align a random jump to template.
file	util.hh
	Align a random jump to template.
file	WeightedFragmentSmoothTrialMover.cc
	Fragment insertion and trial, each residue has a customized weight for the frequency of insertion.
file	WeightedFragmentSmoothTrialMover.fwd.hh
file	WeightedFragmentSmoothTrialMover.hh
	Fragment insertion and trial, each residue has a customized weight for the frequency of insertion.
file	WeightedFragmentTrialMover.cc
	Fragment insertion and trial, each residue has a customized weight for the frequency of insertion.
file	WeightedFragmentTrialMover.fwd.hh
file	WeightedFragmentTrialMover.hh
	Fragment insertion and trial, each residue has a customized weight for the frequency of insertion.