DomainAssembly.cc File Reference

Domain Assembly. More...

#include <protocols/hybridization/DomainAssembly.hh>
#include <protocols/hybridization/TMalign.hh>
#include <protocols/hybridization/util.hh>
#include <protocols/docking/DockingLowRes.hh>
#include <protocols/rigid/RigidBodyMover.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/util.hh>
#include <core/id/AtomID.hh>
#include <core/id/AtomID_Map.hh>
#include <core/chemical/VariantType.hh>
#include <core/conformation/Conformation.hh>
#include <core/types.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/methods/EnergyMethodOptions.hh>
#include <core/scoring/Energies.hh>
#include <numeric/random/random.hh>
#include <numeric/random/WeightedSampler.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/cm.OptionKeys.gen.hh>
#include <utility/vector1.hh>
#include <ObjexxFCL/format.hh>
#include <basic/Tracer.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::hybridization

Functions
static thread_local basic::Tracer	TR ("protocols.hybridization.DomainAssembly")
bool	protocols::hybridization::TMalign_poses (core::pose::Pose &aligned_pose, core::pose::Pose const &ref_pose, std::list< Size > const &residue_list, std::list< Size > const &ref_residue_list)
void	protocols::hybridization::remove_residues (core::pose::Pose &pose, utility::vector1< int > const resnum_list, utility::vector1< int > &remaining_resnum)
utility::vector1< Size >	protocols::hybridization::find_uncovered_residues (core::pose::Pose const &pose, utility::vector1< Size > const covered_residues)
core::Real	protocols::hybridization::gap_distance (Size Seq_gap)

Detailed Description

Domain Assembly.

Author

Yifan Song

Function Documentation

static thread_local basic::Tracer TR ( "protocols.hybridization.DomainAssembly"  )

static