TMalign.hh File Reference

A reimplementation of TM-align algorithm. More...

#include <math.h>
#include <string>
#include <vector>
#include <iterator>
#include <algorithm>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <numeric/xyzVector.hh>
#include <numeric/xyzMatrix.hh>
#include <numeric/xyz.functions.hh>
#include <core/id/AtomID.hh>
#include <core/id/AtomID_Map.hh>
#include <core/conformation/Residue.hh>

Classes
class	protocols::hybridization::TMalign

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::hybridization

Macros
#define	getmax(a, b)   a>b?a:b
#define	getmin(a, b)   a>b?b:a

Detailed Description

A reimplementation of TM-align algorithm.

Author

Yifan Song

Macro Definition Documentation

#define getmax	(		a,
			b
	)		a>b?a:b

#define getmin	(		a,
			b
	)		a>b?b:a

Referenced by protocols::hybridization::TMalign::get_initial(), protocols::hybridization::TMalign::get_initial_fgt(), protocols::hybridization::TMalign::get_initial_local(), and protocols::hybridization::TMalign::parameter_set4search().