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Rosetta Protocols
2015.25
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#include <protocols/hybridization/MRMover.hh>#include <protocols/hybridization/HybridizeProtocol.hh>#include <protocols/electron_density/util.hh>#include <protocols/viewer/viewers.hh>#include <protocols/moves/Mover.hh>#include <protocols/moves/Mover.fwd.hh>#include <protocols/moves/MoverContainer.hh>#include <protocols/rigid/RigidBodyMover.hh>#include <protocols/simple_moves/PackRotamersMover.hh>#include <protocols/simple_moves/symmetry/SetupForSymmetryMover.hh>#include <protocols/simple_moves/SwitchResidueTypeSetMover.hh>#include <protocols/relax/util.hh>#include <protocols/jd2/JobDistributor.hh>#include <protocols/jd2/Job.hh>#include <protocols/comparative_modeling/ThreadingJob.hh>#include <protocols/relax/FastRelax.hh>#include <core/scoring/electron_density/ElectronDensity.hh>#include <protocols/loops/loops_main.hh>#include <protocols/loops/Loop.hh>#include <protocols/loops/Loops.hh>#include <protocols/loops/loop_mover/perturb/LoopMover_QuickCCD.hh>#include <protocols/comparative_modeling/LoopRelaxMover.hh>#include <protocols/simple_moves/MissingDensityToJumpMover.hh>#include <protocols/relax/RelaxProtocolBase.hh>#include <protocols/rbsegment_relax/AutoRBRelaxMover.hh>#include <protocols/rbsegment_relax/util.hh>#include <core/kinematics/MoveMap.hh>#include <core/pose/Pose.hh>#include <core/pose/PDBInfo.hh>#include <core/conformation/Conformation.hh>#include <core/conformation/util.hh>#include <core/pose/util.hh>#include <core/optimization/AtomTreeMinimizer.hh>#include <core/optimization/symmetry/SymAtomTreeMinimizer.hh>#include <core/scoring/ScoreFunction.hh>#include <core/scoring/ScoreFunctionFactory.hh>#include <core/scoring/electron_density/util.hh>#include <core/scoring/constraints/util.hh>#include <core/pack/task/PackerTask.hh>#include <core/pack/task/TaskFactory.hh>#include <core/sequence/Sequence.hh>#include <core/sequence/ScoringScheme.fwd.hh>#include <core/id/SequenceMapping.hh>#include <core/sequence/SequenceAlignment.hh>#include <core/pose/symmetry/util.hh>#include <protocols/simple_moves/symmetry/SymPackRotamersMover.hh>#include <core/conformation/Residue.hh>#include <utility/string_util.hh>#include <basic/options/option.hh>#include <basic/options/option_macros.hh>#include <basic/options/keys/OptionKeys.hh>#include <basic/options/keys/out.OptionKeys.gen.hh>#include <basic/options/keys/loops.OptionKeys.gen.hh>#include <basic/options/keys/edensity.OptionKeys.gen.hh>#include <basic/options/keys/symmetry.OptionKeys.gen.hh>#include <basic/options/keys/optimization.OptionKeys.gen.hh>#include <basic/options/keys/relax.OptionKeys.gen.hh>#include <basic/options/keys/constraints.OptionKeys.gen.hh>#include <basic/Tracer.hh>Namespaces | |
| protocols | |
| The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP. | |
| protocols::hybridization | |
Functions | |
| static thread_local basic::Tracer | protocols::hybridization::TR ("protocols.electron_density.util") |
| core::Size | protocols::hybridization::parse_res (core::pose::Pose const &pose, std::string resnum) |
1.8.7