MatchGrafter.cc File Reference

Takes a scaffold protein and a match pdb from RosettaMatch, grafts the match onto the protein. For zinc homodimer design, it can then combine two grafted poses by overlaying the zinc atoms. More...

#include <protocols/metal_interface/MatchGrafter.hh>
#include <protocols/metal_interface/FindClosestAtom.hh>
#include <core/chemical/util.hh>
#include <core/chemical/VariantType.hh>
#include <core/chemical/ResidueConnection.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/ResidueType.hh>
#include <core/chemical/AtomType.hh>
#include <core/chemical/ResidueSelector.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/conformation/Conformation.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/Jump.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/types.hh>
#include <numeric/xyzVector.hh>
#include <numeric/xyz.io.hh>
#include <utility/vector1.hh>
#include <basic/Tracer.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::metal_interface

Typedefs
typedef core::pose::Pose	Pose
typedef numeric::xyzVector < core::Real >	point

Functions
static thread_local basic::Tracer	TR ("protocols.metal_interface.MatchGrafter")

Detailed Description

Takes a scaffold protein and a match pdb from RosettaMatch, grafts the match onto the protein. For zinc homodimer design, it can then combine two grafted poses by overlaying the zinc atoms.

Author

Bryan Der

Typedef Documentation

typedef numeric::xyzVector<core::Real> point

typedef core::pose::Pose Pose

Function Documentation

static thread_local basic::Tracer TR ( "protocols.metal_interface.MatchGrafter"  )

static