protocols::genetic_algorithm Namespace Reference

Classes
class	DiscreteRandomizer
class	Entity
class	EntityElement
	Entity element. More...
class	EntityElementCreator
	Entity element creator. More...
class	EntityElementFactory
	The EntityElementFactory is responsible for instantiating entity elements from strings. More...
class	EntityElementRegistrator
struct	EntityElementsEqual
class	EntityRandomizer
class	FitnessFunction
class	GeneticAlgorithm
class	GeneticAlgorithmBase
class	Mutate1Randomizer
class	PositionSpecificRandomizer
	different set of choices at each position in Entity's traits More...
struct	Vec1Hash

Typedefs
typedef utility::pointer::shared_ptr < EntityElement >	EntityElementOP
typedef utility::pointer::shared_ptr < EntityElement const >	EntityElementCOP
typedef utility::vector1 < EntityElementOP >	EntityElements
typedef utility::pointer::shared_ptr < EntityElementCreator >	EntityElementCreatorOP
typedef utility::pointer::shared_ptr < EntityElementCreator const >	EntityElementCreatorCOP
typedef utility::pointer::shared_ptr < Entity >	EntityOP
typedef utility::pointer::shared_ptr < Entity const >	EntityCOP
typedef utility::pointer::shared_ptr < EntityRandomizer >	EntityRandomizerOP
typedef utility::pointer::shared_ptr < EntityRandomizer const >	EntityRandomizerCOP
typedef utility::pointer::shared_ptr < PositionSpecificRandomizer >	PositionSpecificRandomizerOP
typedef utility::pointer::shared_ptr < PositionSpecificRandomizer const >	PositionSpecificRandomizerCOP
typedef utility::pointer::shared_ptr < GeneticAlgorithmBase >	GeneticAlgorithmBaseOP
typedef utility::pointer::shared_ptr < GeneticAlgorithmBase const >	GeneticAlgorithmBaseCOP
typedef utility::pointer::shared_ptr < GeneticAlgorithm >	GeneticAlgorithmOP
typedef utility::pointer::shared_ptr < GeneticAlgorithm const >	GeneticAlgorithmCOP
typedef utility::pointer::shared_ptr < Mutate1Randomizer >	Mutate1RandomizerOP
typedef utility::pointer::shared_ptr < Mutate1Randomizer const >	Mutate1RandomizerCOP

Functions
std::ostream &	operator<< (std::ostream &os, Entity const &entity)
template<typename T >
bool	lt_OP_deref (utility::pointer::shared_ptr< T > const &a, utility::pointer::shared_ptr< T > const &b)
	for sorting owning pointers by that to which they point More...
template<typename T >
bool	eq_OP_deref (utility::pointer::shared_ptr< T > const &a, utility::pointer::shared_ptr< T > const &b)
	for assessing equality between owning pointers by that to which they point More...
static thread_local basic::Tracer	TR ("protocols.genetic_algorithm")

Typedef Documentation

typedef utility::pointer::shared_ptr< Entity const > protocols::genetic_algorithm::EntityCOP

typedef utility::pointer::shared_ptr< EntityElement const > protocols::genetic_algorithm::EntityElementCOP

typedef utility::pointer::shared_ptr< EntityElementCreator const > protocols::genetic_algorithm::EntityElementCreatorCOP

typedef utility::pointer::shared_ptr< EntityElementCreator > protocols::genetic_algorithm::EntityElementCreatorOP

typedef utility::pointer::shared_ptr< EntityElement > protocols::genetic_algorithm::EntityElementOP

typedef utility::vector1< EntityElementOP > protocols::genetic_algorithm::EntityElements

typedef utility::pointer::shared_ptr< Entity > protocols::genetic_algorithm::EntityOP

typedef utility::pointer::shared_ptr< EntityRandomizer const > protocols::genetic_algorithm::EntityRandomizerCOP

typedef utility::pointer::shared_ptr< EntityRandomizer > protocols::genetic_algorithm::EntityRandomizerOP

typedef utility::pointer::shared_ptr< GeneticAlgorithmBase const > protocols::genetic_algorithm::GeneticAlgorithmBaseCOP

typedef utility::pointer::shared_ptr< GeneticAlgorithmBase > protocols::genetic_algorithm::GeneticAlgorithmBaseOP

typedef utility::pointer::shared_ptr< GeneticAlgorithm const > protocols::genetic_algorithm::GeneticAlgorithmCOP

typedef utility::pointer::shared_ptr< GeneticAlgorithm > protocols::genetic_algorithm::GeneticAlgorithmOP

typedef utility::pointer::shared_ptr< Mutate1Randomizer const > protocols::genetic_algorithm::Mutate1RandomizerCOP

typedef utility::pointer::shared_ptr< Mutate1Randomizer > protocols::genetic_algorithm::Mutate1RandomizerOP

typedef utility::pointer::shared_ptr< PositionSpecificRandomizer const > protocols::genetic_algorithm::PositionSpecificRandomizerCOP

typedef utility::pointer::shared_ptr< PositionSpecificRandomizer > protocols::genetic_algorithm::PositionSpecificRandomizerOP

Function Documentation

template<typename T >

bool protocols::genetic_algorithm::eq_OP_deref	(	utility::pointer::shared_ptr< T > const &	a,
		utility::pointer::shared_ptr< T > const &	b
	)

for assessing equality between owning pointers by that to which they point

References protocols::match::upstream::b.

template<typename T >

bool protocols::genetic_algorithm::lt_OP_deref	(	utility::pointer::shared_ptr< T > const &	a,
		utility::pointer::shared_ptr< T > const &	b
	)

for sorting owning pointers by that to which they point

References protocols::match::upstream::b.

std::ostream & protocols::genetic_algorithm::operator<<	(	std::ostream &	os,
		Entity const &	entity
	)

References protocols::genetic_algorithm::Entity::show().

static thread_local basic::Tracer protocols::genetic_algorithm::TR ( "protocols.genetic_algorithm"  )

static

Referenced by protocols::genetic_algorithm::GeneticAlgorithmBase::fill_with_perturbations_of_existing_entities(), and protocols::genetic_algorithm::GeneticAlgorithmBase::read_entities_checkpoint().