SecStructFinder.cc File Reference

#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/conformation/Conformation.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/ResidueType.hh>
#include <core/chemical/gasteiger/GasteigerAtomTypeSet.hh>
#include <core/chemical/ResidueProperties.hh>
#include <core/chemical/rna/RNA_ResidueType.hh>
#include <core/chemical/RingConformerSet.hh>
#include <core/chemical/Patch.hh>
#include <core/chemical/VariantType.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/operation/TaskOperation.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/Energies.hh>
#include <core/optimization/Minimizer.hh>
#include <core/optimization/MinimizerMap.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/scoring/constraints/ConstraintSet.fwd.hh>
#include <core/scoring/constraints/util.hh>
#include <core/scoring/constraints/DihedralConstraint.hh>
#include <core/scoring/func/CircularHarmonicFunc.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/MoveMap.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/jd2/Job.hh>
#include <protocols/moves/MoverContainer.hh>
#include <protocols/moves/PyMolMover.hh>
#include <protocols/moves/RepeatMover.hh>
#include <protocols/moves/TrialMover.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/simple_moves/MinMover.hh>
#include <protocols/simple_moves/PackRotamersMover.hh>
#include <protocols/simple_moves/BackboneMover.hh>
#include <protocols/simple_moves/chiral/ChiralMover.hh>
#include <protocols/ncbb/SecStructMinimizeMultiFunc.hh>
#include <protocols/ncbb/SecStructFinder.hh>
#include <protocols/ncbb/SecStructFinderCreator.hh>
#include <numeric/conversions.hh>
#include <numeric/random/random.hh>
#include <basic/basic.hh>
#include <basic/Tracer.hh>
#include <utility/exit.hh>
#include <utility/tag/Tag.hh>
#include <utility/pointer/owning_ptr.hh>
#include <sstream>
#include <cmath>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::ncbb

Variables
static basic::Tracer	TR ("SecStructFinder")

Variable Documentation

basic::Tracer TR("SecStructFinder")

static