FoldConstraints.cc File Reference

ab-initio fragment assembly protocol for proteins under the influence of contraints (e.g., NOE) More...

#include <protocols/abinitio/FoldConstraints.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/types.hh>
#include <core/scoring/ScoreType.hh>
#include <protocols/constraints_additional/MaxSeqSepConstraintSet.hh>
#include <utility/vector1.fwd.hh>
#include <utility/pointer/ReferenceCount.hh>
#include <numeric/numeric.functions.hh>
#include <basic/Tracer.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/fold_cst.OptionKeys.gen.hh>
#include <basic/options/keys/constraints.OptionKeys.gen.hh>
#include <cstdlib>
#include <string>
#include <core/fragment/FragSet.hh>
#include <core/kinematics/MoveMap.hh>
#include <protocols/simple_moves/FragmentMover.hh>
#include <protocols/simple_moves/MinMover.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/moves/TrialMover.hh>
#include <utility/vector1.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::abinitio

Functions
static thread_local basic::Tracer	tr ("protocols.abinitio.foldconstraints", basic::t_info)
Size	protocols::abinitio::noe_stage (Size total_res, Real factor)

Detailed Description

ab-initio fragment assembly protocol for proteins under the influence of contraints (e.g., NOE)

Author

Oliver Lange

Function Documentation

static thread_local basic::Tracer tr ( "protocols.abinitio.foldconstraints"  , basic::t_info    )

static

Referenced by protocols::abinitio::FoldConstraints::apply(), protocols::abinitio::FoldConstraints::do_stage1_cycles(), protocols::abinitio::FoldConstraints::min_trial(), protocols::abinitio::FoldConstraints::prepare_loop_in_stage3(), protocols::abinitio::FoldConstraints::prepare_loop_in_stage4(), protocols::abinitio::FoldConstraints::prepare_stage1(), protocols::abinitio::FoldConstraints::prepare_stage2(), protocols::abinitio::FoldConstraints::prepare_stage4(), protocols::abinitio::FoldConstraints::set_default_scores(), protocols::abinitio::FoldConstraints::set_max_seq_sep(), and protocols::abinitio::FoldConstraints::setup_default_min_move().