protocols::fldsgn Namespace Reference

Namespaces
	filters
	potentials
	topology

Classes
class	BluePrintBDR
class	BluePrintBDRCreator
class	CircularPermutation
class	CircularPermutationCreator
class	MatchResidues
class	MatchResiduesMover
class	MatchResiduesMoverCreator
class	MyAtom
class	NcontactsCalculator
class	SheetConstraintsRCG
class	SheetCstGeneratorCreator

Typedefs
typedef utility::pointer::shared_ptr < BluePrintBDR >	BluePrintBDR_OP
	BluePrintBDR owning pointer. More...
typedef utility::pointer::shared_ptr < BluePrintBDR const >	BluePrintBDR_COP
	BluePrintBDR const owning pointer. More...
typedef utility::pointer::weak_ptr < BluePrintBDR >	BluePrintBDR_AP
	BluePrintBDR access pointer. More...
typedef utility::pointer::weak_ptr < BluePrintBDR const >	BluePrintBDR_CAP
	BluePrintBDR const access pointer. More...
typedef utility::pointer::shared_ptr < CircularPermutation >	CircularPermutation_OP
	CircularPermutation owning pointer. More...
typedef utility::pointer::shared_ptr < CircularPermutation const >	CircularPermutation_COP
	CircularPermutation const owning pointer. More...
typedef utility::pointer::weak_ptr < CircularPermutation >	CircularPermutation_AP
	CircularPermutation access pointer. More...
typedef utility::pointer::weak_ptr < CircularPermutation const >	CircularPermutation_CAP
	CircularPermutation const access pointer. More...
typedef utility::vector1 < core::Size >	VecSize
typedef utility::vector1< VecSize >	VecVecSize
typedef utility::pointer::shared_ptr < MatchResiduesMover >	MatchResiduesMoverOP
typedef utility::pointer::shared_ptr < MatchResiduesMover const >	MatchResiduesMoverCOP
typedef utility::pointer::shared_ptr < SetAACompositionPotential >	SetAACompositionPotential_OP
	SetAACompositionPotential owning pointer. More...
typedef utility::pointer::shared_ptr < SetAACompositionPotential const >	SetAACompositionPotential_COP
	SetAACompositionPotential const owning pointer. More...
typedef utility::pointer::weak_ptr < SetAACompositionPotential >	SetAACompositionPotential_AP
	SetAACompositionPotential access pointer. More...
typedef utility::pointer::weak_ptr < SetAACompositionPotential const >	SetAACompositionPotential_CAP
	SetAACompositionPotential const access pointer. More...
typedef utility::pointer::shared_ptr < SheetConstraintsRCG >	SheetConstraintsRCGOP

Functions
static thread_local basic::Tracer	TR ("protocols.fldsgn.BluePrintBDR")
static thread_local basic::Tracer	TR ("protocols.fldsgn.CircularPermutation")

Typedef Documentation

typedef utility::pointer::weak_ptr< BluePrintBDR > protocols::fldsgn::BluePrintBDR_AP

BluePrintBDR access pointer.

typedef utility::pointer::weak_ptr< BluePrintBDR const > protocols::fldsgn::BluePrintBDR_CAP

BluePrintBDR const access pointer.

typedef utility::pointer::shared_ptr< BluePrintBDR const > protocols::fldsgn::BluePrintBDR_COP

BluePrintBDR const owning pointer.

typedef utility::pointer::shared_ptr< BluePrintBDR > protocols::fldsgn::BluePrintBDR_OP

BluePrintBDR owning pointer.

typedef utility::pointer::weak_ptr< CircularPermutation > protocols::fldsgn::CircularPermutation_AP

CircularPermutation access pointer.

typedef utility::pointer::weak_ptr< CircularPermutation const > protocols::fldsgn::CircularPermutation_CAP

CircularPermutation const access pointer.

typedef utility::pointer::shared_ptr< CircularPermutation const > protocols::fldsgn::CircularPermutation_COP

CircularPermutation const owning pointer.

typedef utility::pointer::shared_ptr< CircularPermutation > protocols::fldsgn::CircularPermutation_OP

CircularPermutation owning pointer.

typedef utility::pointer::shared_ptr< MatchResiduesMover const > protocols::fldsgn::MatchResiduesMoverCOP

typedef utility::pointer::shared_ptr< MatchResiduesMover > protocols::fldsgn::MatchResiduesMoverOP

typedef utility::pointer::weak_ptr< SetAACompositionPotential > protocols::fldsgn::SetAACompositionPotential_AP

SetAACompositionPotential access pointer.

typedef utility::pointer::weak_ptr< SetAACompositionPotential const > protocols::fldsgn::SetAACompositionPotential_CAP

SetAACompositionPotential const access pointer.

typedef utility::pointer::shared_ptr< SetAACompositionPotential const > protocols::fldsgn::SetAACompositionPotential_COP

SetAACompositionPotential const owning pointer.

typedef utility::pointer::shared_ptr< SetAACompositionPotential > protocols::fldsgn::SetAACompositionPotential_OP

SetAACompositionPotential owning pointer.

typedef utility::pointer::shared_ptr< SheetConstraintsRCG > protocols::fldsgn::SheetConstraintsRCGOP

typedef utility::vector1< core::Size > protocols::fldsgn::VecSize

typedef utility::vector1< VecSize > protocols::fldsgn::VecVecSize

Function Documentation

static thread_local basic::Tracer protocols::fldsgn::TR ( "protocols.fldsgn.CircularPermutation"  )

static

static thread_local basic::Tracer protocols::fldsgn::TR ( "protocols.fldsgn.BluePrintBDR"  )

static

Referenced by protocols::fldsgn::filters::HelixKinkFilter::apply(), protocols::fldsgn::CircularPermutation::apply(), protocols::fldsgn::filters::HelixPairingFilter::apply(), protocols::fldsgn::filters::HSSTripletFilter::apply(), protocols::fldsgn::topology::BetaAlphaBetaMotif::calc_helix_cycle(), protocols::fldsgn::MatchResidues::compute(), protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::compute(), protocols::fldsgn::filters::HelixPairingFilter::compute(), protocols::fldsgn::SheetConstraintsRCG::generate_remodel_constraints(), protocols::fldsgn::topology::SheetSet::initialize(), protocols::fldsgn::MatchResidues::parse_my_tag(), protocols::fldsgn::filters::HelixKinkFilter::parse_my_tag(), protocols::fldsgn::filters::HelixPairingFilter::parse_my_tag(), protocols::fldsgn::filters::HSSTripletFilter::parse_my_tag(), protocols::fldsgn::topology::HSSTripletSet::push_back(), protocols::fldsgn::topology::StrandPairing::redefine_begin_end(), and protocols::fldsgn::topology::BetaAlphaBetaMotifSet::set_babmotifs().