protocols::symmetric_docking Namespace Reference

Namespaces
	membrane

Classes
class	SymDockBaseProtocol
class	SymDockingHiRes
class	SymDockingLowRes
class	SymDockProtocol
	Main Symmetric Docking protocol class. More...
class	SymDockProtocolCreator
class	SymFoldandDockMoveRbJumpMover
class	SymFoldandDockMoveRbJumpMoverCreator
class	SymFoldandDockRbTrialMover
class	SymFoldandDockRbTrialMoverCreator
class	SymFoldandDockSlideTrialMover
class	SymFoldandDockSlideTrialMoverCreator
class	SymInterfaceSidechainMinMover
class	SymRestrictTaskForDocking
class	SymSidechainMinMover

Typedefs
typedef utility::pointer::shared_ptr < SymDockingHiRes >	SymDockingHiResOP
typedef utility::pointer::shared_ptr < SymDockingHiRes const >	SymDockingHiResCOP
typedef utility::pointer::shared_ptr < SymDockingLowRes >	SymDockingLowResOP
typedef utility::pointer::shared_ptr < SymDockingLowRes const >	SymDockingLowResCOP
typedef utility::pointer::shared_ptr < SymDockProtocol >	SymDockProtocolOP
typedef utility::pointer::shared_ptr < SymDockProtocol const >	SymDockProtocolCOP
typedef utility::pointer::shared_ptr < SymFoldandDockMoveRbJumpMover >	SymFoldandDockMoveRbJumpMoverOP
typedef utility::pointer::shared_ptr < SymFoldandDockMoveRbJumpMover const >	SymFoldandDockMoveRbJumpMoverCOP
typedef utility::pointer::shared_ptr < SymFoldandDockRbTrialMover >	SymFoldandDockRbTrialMoverOP
typedef utility::pointer::shared_ptr < SymFoldandDockRbTrialMover const >	SymFoldandDockRbTrialMoverCOP
typedef utility::pointer::shared_ptr < SymFoldandDockSlideTrialMover >	SymFoldandDockSlideTrialMoverOP
typedef utility::pointer::shared_ptr < SymFoldandDockSlideTrialMover const >	SymFoldandDockSlideTrialMoverCOP
typedef utility::pointer::shared_ptr < SymRestrictTaskForDocking >	SymRestrictTaskForDockingOP
typedef utility::pointer::shared_ptr < SymSidechainMinMover >	SymSidechainMinMoverOP
typedef utility::pointer::shared_ptr < SymSidechainMinMover >	SymSidechainMinMoverCOP
typedef utility::pointer::shared_ptr < SymInterfaceSidechainMinMover >	SymInterfaceSidechainMinMoverOP
typedef utility::pointer::shared_ptr < SymInterfaceSidechainMinMover >	SymInterfaceSidechainMinMoverCOP

Functions
static thread_local basic::Tracer	TR ("protocols.symmetric_docking.SymDockBaseProtocol")
static thread_local basic::Tracer	TR ("protocols.symmetric_docking.SymDockProtocol")
void	SymDock_main ()
	Define Main funciton for symmetric docking protocol. More...
static thread_local basic::Tracer	TR ("protocols.moves.symmetry.SymFoldandDockMoveRbJumpMover")
static thread_local basic::Tracer	TR ("protocols.moves.symmetry.SymFoldandDockRbTrialMover")
static thread_local basic::Tracer	TR ("protocols.moves.symmetry.SymFoldandDockSlideTrialMover")

Typedef Documentation

typedef utility::pointer::shared_ptr< SymDockingHiRes const > protocols::symmetric_docking::SymDockingHiResCOP

typedef utility::pointer::shared_ptr< SymDockingHiRes > protocols::symmetric_docking::SymDockingHiResOP

typedef utility::pointer::shared_ptr< SymDockingLowRes const > protocols::symmetric_docking::SymDockingLowResCOP

typedef utility::pointer::shared_ptr< SymDockingLowRes > protocols::symmetric_docking::SymDockingLowResOP

typedef utility::pointer::shared_ptr< SymDockProtocol const > protocols::symmetric_docking::SymDockProtocolCOP

typedef utility::pointer::shared_ptr< SymDockProtocol > protocols::symmetric_docking::SymDockProtocolOP

typedef utility::pointer::shared_ptr< SymFoldandDockMoveRbJumpMover const > protocols::symmetric_docking::SymFoldandDockMoveRbJumpMoverCOP

typedef utility::pointer::shared_ptr< SymFoldandDockMoveRbJumpMover > protocols::symmetric_docking::SymFoldandDockMoveRbJumpMoverOP

typedef utility::pointer::shared_ptr< SymFoldandDockRbTrialMover const > protocols::symmetric_docking::SymFoldandDockRbTrialMoverCOP

typedef utility::pointer::shared_ptr< SymFoldandDockRbTrialMover > protocols::symmetric_docking::SymFoldandDockRbTrialMoverOP

typedef utility::pointer::shared_ptr< SymFoldandDockSlideTrialMover const > protocols::symmetric_docking::SymFoldandDockSlideTrialMoverCOP

typedef utility::pointer::shared_ptr< SymFoldandDockSlideTrialMover > protocols::symmetric_docking::SymFoldandDockSlideTrialMoverOP

typedef utility::pointer::shared_ptr< SymInterfaceSidechainMinMover > protocols::symmetric_docking::SymInterfaceSidechainMinMoverCOP

typedef utility::pointer::shared_ptr< SymInterfaceSidechainMinMover > protocols::symmetric_docking::SymInterfaceSidechainMinMoverOP

typedef utility::pointer::shared_ptr< SymRestrictTaskForDocking > protocols::symmetric_docking::SymRestrictTaskForDockingOP

typedef utility::pointer::shared_ptr< SymSidechainMinMover > protocols::symmetric_docking::SymSidechainMinMoverCOP

typedef utility::pointer::shared_ptr< SymSidechainMinMover > protocols::symmetric_docking::SymSidechainMinMoverOP

Function Documentation

void protocols::symmetric_docking::SymDock_main

(

)

Define Main funciton for symmetric docking protocol.

References protocols::jd2::JobDistributor::get_instance(), and protocols::jd2::JobDistributor::go().

static thread_local basic::Tracer protocols::symmetric_docking::TR ( "protocols.symmetric_docking.SymDockBaseProtocol"  )

static

Referenced by protocols::symmetric_docking::SymFoldandDockSlideTrialMover::apply(), protocols::symmetric_docking::SymDockingLowRes::apply(), protocols::symmetric_docking::SymFoldandDockRbTrialMover::apply(), protocols::symmetric_docking::SymDockingHiRes::apply(), protocols::symmetric_docking::SymDockProtocol::apply(), protocols::symmetric_docking::SymDockProtocol::docking_highres_filter(), protocols::symmetric_docking::SymDockProtocol::docking_lowres_filter(), protocols::symmetric_docking::SymDockProtocol::recover_sidechains(), protocols::symmetric_docking::SymDockingLowRes::set_default_protocol(), protocols::symmetric_docking::SymDockingHiRes::set_dock_mcm_protocol(), protocols::symmetric_docking::SymDockingHiRes::set_dock_min_protocol(), protocols::symmetric_docking::SymDockingHiRes::set_dock_ppk_protocol(), and protocols::symmetric_docking::SymDockingHiRes::setup_packing().

static thread_local basic::Tracer protocols::symmetric_docking::TR ( "protocols.moves.symmetry.SymFoldandDockMoveRbJumpMover"  )

static

static thread_local basic::Tracer protocols::symmetric_docking::TR ( "protocols.moves.symmetry.SymFoldandDockRbTrialMover"  )

static

static thread_local basic::Tracer protocols::symmetric_docking::TR ( "protocols.moves.symmetry.SymFoldandDockSlideTrialMover"  )

static

static thread_local basic::Tracer protocols::symmetric_docking::TR ( "protocols.symmetric_docking.SymDockProtocol"  )

static