util.cc File Reference

#include <protocols/antibody/clusters/util.hh>
#include <protocols/antibody/clusters/CDRCluster.hh>
#include <protocols/antibody/clusters/CDRClusterSet.hh>
#include <protocols/antibody/AntibodyInfo.hh>
#include <core/types.hh>
#include <core/pose/util.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/datacache/CacheableDataType.hh>
#include <basic/Tracer.hh>
#include <basic/datacache/BasicDataCache.hh>
#include <utility/vector1.hh>
#include <utility/string_util.hh>
#include <numeric/NumericTraits.hh>
#include <math.h>
#include <cmath>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::antibody
	protocols::antibody::clusters

Functions
static thread_local basic::Tracer	protocols::antibody::clusters::TR ("protocols.antibody.clusters")
void	protocols::antibody::clusters::add_cluster_comments_to_pose (core::pose::Pose &pose, AntibodyInfoCOP ab_info)
std::string	protocols::antibody::clusters::get_pose_cis_trans_conformation (core::pose::Pose const &pose, core::Size const start, core::Size const end)
core::Real	protocols::antibody::clusters::calculate_dihedral_distance (vector1< Real > cluster_phis, vector1< Real > pose_phis, vector1< Real > cluster_psis, vector1< Real > pose_psis)
	Calculates the dihedral distance used to match cluster centers. More...
bool	protocols::antibody::clusters::check_if_pose_renumbered_for_clusters (core::pose::Pose const &pose)
	Very basic way to check to make sure pose residues are North_AHO (North, et al) scheme, which allows the clustering. More...
CDRClusterEnum	protocols::antibody::clusters::get_cluster_from_cache_or_ab_info (AntibodyInfoCOP ab_info, core::pose::Pose const &pose, CDRNameEnum const cdr)

Detailed Description

Author

Jared Adolf-Bryfogle (jadol.nosp@m.fbr@.nosp@m.gmail.nosp@m..com)