antibody Directory Reference

Directory dependency graph for antibody:

Directories
directory	clusters
directory	constraints
directory	database
directory	design
directory	snugdock
directory	task_operations

Files
file	Ab_TemplateInfo.cc
file	Ab_TemplateInfo.fwd.hh
file	Ab_TemplateInfo.hh
file	AntibodyEnum.hh
	Enumerators + TypeDefs for Antibody namespace.
file	AntibodyEnumManager.cc
	Functions for AntibodyEnumerators.
file	AntibodyEnumManager.fwd.hh
file	AntibodyEnumManager.hh
	Functions for AntibodyEnumerators.
file	AntibodyFeatures.cc
file	AntibodyFeatures.fwd.hh
file	AntibodyFeatures.hh
file	AntibodyFeaturesCreator.cc
file	AntibodyFeaturesCreator.hh
file	AntibodyInfo.cc
	Class for getting antibody-specific objects and information.
file	AntibodyInfo.fwd.hh
	AntibodyInfo class forward declarations header.
file	AntibodyInfo.hh
	Class for getting antibody-specific objects and information.
file	AntibodyModelerProtocol.cc
	Build a homology model of an antibody.
file	AntibodyModelerProtocol.fwd.hh
	forward declaration
file	AntibodyModelerProtocol.hh
	Build a homology model of an antibody.
file	AntibodyNumberingParser.cc
file	AntibodyNumberingParser.fwd.hh
file	AntibodyNumberingParser.hh
	Read Antibody Numbering schemes and transform info from the database.
file	CDRsMinPackMin.cc
	Build a homology model of an antibody.
file	CDRsMinPackMin.fwd.hh
	forward declaration
file	CDRsMinPackMin.hh
	Main CDR minimization method in protocols/antibody.
file	CloseOneCDRLoop.cc
	grafts a cdr onto the template of an antibody framework
file	CloseOneCDRLoop.fwd.hh
file	CloseOneCDRLoop.hh
file	GraftCDRLoopsProtocol.cc
	Build a homology model of an antibody.
file	GraftCDRLoopsProtocol.fwd.hh
	forward declaration
file	GraftCDRLoopsProtocol.hh
	Build a homology model of an antibody.
file	GraftedStemOptimizer.cc
	Optimize the CDR Grafted stem.
file	GraftedStemOptimizer.fwd.hh
file	GraftedStemOptimizer.hh
	Optimize the CDR Grafted stem.
file	GraftOneCDRLoop.cc
	grafts a cdr onto the template of an antibody framework
file	GraftOneCDRLoop.fwd.hh
file	GraftOneCDRLoop.hh
	grafts a cdr onto the template of an antibody framework
file	H3CterInsert.cc
	Build a homology model of an antibody.
file	H3CterInsert.fwd.hh
	Build a homology model of an antibody.
file	H3CterInsert.hh
	Build a homology model of an antibody.
file	H3PerturbCCD.cc
	Build a homology model of an antibody.
file	H3PerturbCCD.fwd.hh
file	H3PerturbCCD.hh
	Build a homology model of an antibody.
file	H3RefineCCD.cc
	Build a homology model of an antibody.
file	H3RefineCCD.fwd.hh
file	H3RefineCCD.hh
	Build a homology model of an antibody.
file	LHRepulsiveRamp.cc
	Build a homology model of an antibody.
file	LHRepulsiveRamp.fwd.hh
file	LHRepulsiveRamp.hh
	Build a homology model of an antibody.
file	metrics.cc
	Routines to measure antibodies.
file	metrics.hh
file	ModelCDRH3.cc
	models CDR H3 loop using loop modeling
file	ModelCDRH3.fwd.hh
file	ModelCDRH3.hh
file	RefineBetaBarrel.cc
	Build a homology model of an antibody.
file	RefineBetaBarrel.fwd.hh
	forward declaration
file	RefineBetaBarrel.hh
	Build a homology model of an antibody.
file	RefineOneCDRLoop.cc
	Build a homology model of an antibody.
file	RefineOneCDRLoop.fwd.hh
file	RefineOneCDRLoop.hh
	Build a homology model of an antibody.
file	RefineOneCDRLoopCentroid.cc
	Build a homology model of an antibody.
file	RefineOneCDRLoopCentroid.fwd.hh
file	RefineOneCDRLoopCentroid.hh
	Build a homology model of an antibody.
file	util.cc
file	util.hh
	Utility functions for the Antibody namespace.