AntibodyModelerProtocol.cc File Reference

Build a homology model of an antibody. More...

#include <protocols/jobdist/JobDistributors.hh>
#include <basic/datacache/BasicDataCache.hh>
#include <basic/datacache/DiagnosticData.hh>
#include <basic/options/keys/antibody.OptionKeys.gen.hh>
#include <basic/options/keys/constraints.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <basic/options/option.hh>
#include <basic/prof.hh>
#include <basic/Tracer.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueSelector.hh>
#include <core/chemical/VariantType.hh>
#include <core/import_pose/import_pose.hh>
#include <core/io/pdb/pose_io.hh>
#include <core/io/silent/SilentStruct.hh>
#include <core/io/silent/SilentStructFactory.hh>
#include <core/pack/dunbrack/RotamerConstraint.hh>
#include <core/pack/rotamer_set/UnboundRotamersOperation.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pose/datacache/CacheableDataType.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/util.hh>
#include <core/scoring/constraints/ConstraintFactory.hh>
#include <core/scoring/constraints/ConstraintIO.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoreType.hh>
#include <ObjexxFCL/format.hh>
#include <ObjexxFCL/string.functions.hh>
#include <protocols/antibody/AntibodyInfo.hh>
#include <protocols/antibody/AntibodyModelerProtocol.hh>
#include <protocols/antibody/CDRsMinPackMin.hh>
#include <protocols/antibody/ModelCDRH3.hh>
#include <protocols/antibody/RefineBetaBarrel.hh>
#include <protocols/antibody/RefineOneCDRLoop.hh>
#include <protocols/antibody/metrics.hh>
#include <protocols/antibody/util.hh>
#include <protocols/jd2/Job.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/jd2/JobOutputter.hh>
#include <protocols/jd2/ScoreMap.hh>
#include <protocols/loops/loops_main.hh>
#include <protocols/simple_moves/ConstraintSetMover.hh>
#include <protocols/simple_moves/ReturnSidechainMover.hh>
#include <protocols/simple_moves/SwitchResidueTypeSetMover.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::antibody

Functions
static thread_local basic::Tracer	TR ("protocols.antibody.AntibodyModelerProtocol")
std::ostream &	protocols::antibody::operator<< (std::ostream &out, const AntibodyModelerProtocol &ab_m)

Detailed Description

Build a homology model of an antibody.

Author

Jianqing Xu ( xubes.nosp@m.t@gm.nosp@m.ail.c.nosp@m.om )

Function Documentation

static thread_local basic::Tracer TR ( "protocols.antibody.AntibodyModelerProtocol"  )

static