GrowPeptides.cc File Reference

different ways of growing peptide sequences More...

#include <protocols/seeded_abinitio/GrowPeptides.hh>
#include <protocols/seeded_abinitio/GrowPeptidesCreator.hh>
#include <protocols/seeded_abinitio/SeedFoldTree.fwd.hh>
#include <protocols/seeded_abinitio/SeedFoldTree.hh>
#include <core/types.hh>
#include <core/pose/Pose.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/pose/util.hh>
#include <core/import_pose/import_pose.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/conformation/Conformation.hh>
#include <core/scoring/dssp/Dssp.hh>
#include <core/pose/datacache/CacheableObserverType.hh>
#include <core/pose/datacache/ObserverCache.hh>
#include <core/pose/datacache/cacheable_observers.hh>
#include <core/id/SequenceMapping.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunction.fwd.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <core/pose/selection.hh>
#include <string>
#include <utility/string_util.hh>
#include <basic/Tracer.hh>
#include <core/util/SwitchResidueTypeSet.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/chemical/ChemicalManager.fwd.hh>
#include <core/chemical/VariantType.hh>
#include <core/chemical/ResidueSelector.hh>
#include <core/chemical/ResidueTypeSet.fwd.hh>
#include <core/chemical/AtomType.hh>
#include <core/chemical/util.hh>
#include <utility/tag/Tag.hh>
#include <utility/tag/Tag.fwd.hh>
#include <basic/datacache/DataMap.hh>
#include <protocols/loops/Loop.hh>
#include <protocols/loops/Loops.fwd.hh>
#include <protocols/loops/loops_main.hh>
#include <utility/vector1.hh>
#include <set>
#include <boost/foreach.hpp>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::seeded_abinitio

Functions
static thread_local basic::Tracer	TR ("protocols.seeded_abinitio.GrowPeptides")

Detailed Description

different ways of growing peptide sequences

Author

Eva-Maria Strauch (evas0.nosp@m.1@u..nosp@m.washi.nosp@m.ngto.nosp@m.n.edu)

Function Documentation

static thread_local basic::Tracer TR ( "protocols.seeded_abinitio.GrowPeptides"  )

static

Referenced by protocols::seeded_abinitio::GrowPeptides::append_residues_cterminally(), protocols::seeded_abinitio::GrowPeptides::append_residues_nterminally(), protocols::seeded_abinitio::GrowPeptides::apply(), protocols::seeded_abinitio::GrowPeptides::grow_from_verteces(), and protocols::seeded_abinitio::GrowPeptides::parse_my_tag().