SurfaceDockingProtocol.cc File Reference

#include <protocols/surface_docking/SurfaceDockingProtocol.hh>
#include <protocols/surface_docking/CentroidRelaxMover.hh>
#include <protocols/surface_docking/FullatomRelaxMover.hh>
#include <protocols/surface_docking/SurfaceOrientMover.hh>
#include <protocols/surface_docking/SurfaceParameters.hh>
#include <core/scoring/solid_surface/SurfaceEnergies.hh>
#include <protocols/simple_moves/SwitchResidueTypeSetMover.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/jd2/JobOutputter.hh>
#include <protocols/jd2/Job.hh>
#include <protocols/simple_moves/PackRotamersMover.hh>
#include <protocols/rigid/RB_geometry.hh>
#include <protocols/rigid/RigidBodyMover.hh>
#include <core/scoring/dssp/Dssp.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/conformation/Conformation.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/kinematics/FoldTree.hh>
#include <protocols/docking/DockingInitialPerturbation.hh>
#include <protocols/abinitio/ClassicAbinitio.hh>
#include <core/fragment/ConstantLengthFragSet.hh>
#include <core/kinematics/MoveMap.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <basic/options/option.hh>
#include <basic/Tracer.hh>
#include <basic/resource_manager/ResourceManager.hh>
#include <basic/resource_manager/util.hh>
#include <utility/excn/Exceptions.hh>
#include <utility/exit.hh>
#include <string>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::surface_docking

Functions
static thread_local basic::Tracer	TR ("protocols.SurfaceDocking.SurfaceDockingProtocol")

Detailed Description

Author

Robin A Thottungal (ratho.nosp@m.ttun.nosp@m.gal@g.nosp@m.mail.nosp@m..com)

Michael Pacella (mpace.nosp@m.lla8.nosp@m.8@gma.nosp@m.il.c.nosp@m.om)

Function Documentation

static thread_local basic::Tracer TR ( "protocols.SurfaceDocking.SurfaceDockingProtocol"  )

static