DockingProtocol.cc File Reference

#include <protocols/docking/DockingProtocol.hh>
#include <protocols/docking/util.hh>
#include <protocols/docking/metrics.hh>
#include <protocols/docking/DockingEnsemble.hh>
#include <protocols/docking/DockFilters.hh>
#include <protocols/docking/DockingLowRes.hh>
#include <protocols/docking/DockingLowResEnsemble.hh>
#include <protocols/docking/DockMinMover.hh>
#include <protocols/docking/DockMCMProtocol.hh>
#include <protocols/docking/DockingHighResLegacy.hh>
#include <protocols/docking/DockingInitialPerturbation.hh>
#include <protocols/docking/DockingProtocolCreator.hh>
#include <core/chemical/ChemicalManager.fwd.hh>
#include <core/pose/Pose.hh>
#include <protocols/toolbox/task_operations/InterfaceTaskOperation.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/rms_util.tmpl.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreType.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/simple_moves/RepackSidechainsMover.hh>
#include <protocols/simple_moves/ConstraintSetMover.hh>
#include <protocols/simple_moves/ReturnSidechainMover.hh>
#include <protocols/simple_moves/SwitchResidueTypeSetMover.hh>
#include <protocols/moves/MoverContainer.hh>
#include <basic/datacache/DataMap.hh>
#include <protocols/jd2/ScoreMap.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/jd2/util.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <utility/file/FileName.hh>
#include <utility/tools/make_vector1.hh>
#include <utility/tag/Tag.hh>
#include <core/types.hh>
#include <basic/prof.hh>
#include <basic/Tracer.hh>
#include <basic/datacache/BasicDataCache.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/score.OptionKeys.gen.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <basic/options/keys/cluster.OptionKeys.gen.hh>
#include <basic/options/keys/docking.OptionKeys.gen.hh>
#include <basic/options/keys/constraints.OptionKeys.gen.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <ObjexxFCL/format.hh>
#include <algorithm>
#include <core/import_pose/import_pose.hh>
#include <protocols/jd2/Job.hh>
#include <utility/vector0.hh>
#include <utility/vector1.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::docking

Functions
static thread_local basic::Tracer	TR ("protocols.docking.DockingProtocol")
std::ostream &	protocols::docking::operator<< (std::ostream &out, const DockingProtocol &dp)

Detailed Description

Author

Monica Berrondo

Sid Chaudhury

Jeff Gray

Modified by Daisuke Kuroda

Function Documentation

static thread_local basic::Tracer TR ( "protocols.docking.DockingProtocol"  )

static