SeedFoldTree.cc File Reference

#include <protocols/seeded_abinitio/SeededAbinitio_util.hh>
#include <protocols/seeded_abinitio/SeedFoldTree.hh>
#include <protocols/seeded_abinitio/SeedFoldTreeCreator.hh>
#include <protocols/seeded_abinitio/SeedFoldTree.fwd.hh>
#include <core/conformation/Conformation.hh>
#include <core/conformation/Residue.hh>
#include <core/kinematics/FoldTree.hh>
#include <numeric/xyzVector.hh>
#include <basic/datacache/DataMap.hh>
#include <core/types.hh>
#include <core/chemical/ChemicalManager.fwd.hh>
#include <core/chemical/VariantType.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/ScoreFunction.hh>
#include <protocols/filters/Filter.hh>
#include <protocols/loops/Loop.hh>
#include <protocols/loops/Loops.fwd.hh>
#include <protocols/loops/loops_main.hh>
#include <protocols/protein_interface_design/util.hh>
#include <protocols/protein_interface_design/movers/BuildAlaPose.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <protocols/simple_filters/DdgFilter.hh>
#include <utility/vector1.hh>
#include <utility/tag/Tag.fwd.hh>
#include <utility/tag/Tag.hh>
#include <numeric/random/random.hh>
#include <set>
#include <string>
#include <utility>
#include <basic/Tracer.hh>
#include <boost/foreach.hpp>
#include <protocols/simple_filters/AlaScan.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::seeded_abinitio

Functions
static thread_local basic::Tracer	TR ("protocols.seeded_abinitio.SeedFoldTree")
Size	protocols::seeded_abinitio::define_cut_point_stochasticly (Size start_resi, Size stop_resi, std::string secondarystruct_seq, core::Size start_fold_pose)
std::pair< Size, Size >	protocols::seeded_abinitio::get_closest_residue_pair (Size seed_start, Size seed_stop, core::pose::PoseOP &target_seed_pose)
std::pair< Size, Size >	protocols::seeded_abinitio::find_nearest_residue (Size anchor, pose::PoseOP &target_seed_pose)

Detailed Description

Author

Eva-Maria Strauch ( evas0.nosp@m.1@u..nosp@m.washi.nosp@m.ngto.nosp@m.n.edu )

Eva-Maria Strauch (evas0.nosp@m.1@u..nosp@m.washi.nosp@m.ngto.nosp@m.n.edu)

Function Documentation

static thread_local basic::Tracer TR ( "protocols.seeded_abinitio.SeedFoldTree"  )

static