util.cc File Reference

#include <protocols/stepwise/sampler/protein/util.hh>
#include <protocols/stepwise/sampler/input_streams/InputStreamStepWiseSampler.hh>
#include <protocols/stepwise/sampler/protein/ProteinBetaAntiParallelStepWiseSampler.hh>
#include <protocols/stepwise/sampler/protein/ProteinFragmentStepWiseSampler.hh>
#include <protocols/stepwise/sampler/protein/ProteinMainChainStepWiseSampler.hh>
#include <protocols/stepwise/sampler/NoOpStepWiseSampler.hh>
#include <protocols/stepwise/modeler/util.hh>
#include <protocols/stepwise/modeler/file_util.hh>
#include <protocols/stepwise/modeler/align/StepWiseLegacyClustererSilentBased.hh>
#include <protocols/stepwise/modeler/working_parameters/StepWiseWorkingParameters.hh>
#include <protocols/stepwise/modeler/protein/StepWiseProteinBackboneSampler.hh>
#include <utility/io/ozstream.hh>
#include <core/chemical/VariantType.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/id/NamedAtomID.hh>
#include <core/id/TorsionID.hh>
#include <core/io/silent/BinarySilentStruct.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/scoring/hbonds/HBondSet.hh>
#include <core/scoring/hbonds/HBondOptions.hh>
#include <core/scoring/hbonds/hbonds.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/io/silent/SilentFileData.hh>
#include <protocols/stepwise/sampler/StepWiseSamplerSizedComb.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/cluster.OptionKeys.gen.hh>
#include <numeric/xyz.functions.hh>
#include <ObjexxFCL/string.functions.hh>
#include <utility/vector1.hh>
#include <utility/io/izstream.hh>
#include <basic/Tracer.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::stepwise
	protocols::stepwise::sampler
	protocols::stepwise::sampler::protein

Functions
static thread_local basic::Tracer	TR ("protocols.sampler.protein.util")
sampler::StepWiseSamplerSizedOP	protocols::stepwise::sampler::protein::get_basic_protein_sampler (core::pose::Pose const &pose, utility::vector1< core::Size > const &moving_res_list, protocols::stepwise::modeler::working_parameters::StepWiseWorkingParametersCOP working_parameters, protocols::stepwise::modeler::options::StepWiseModelerOptionsCOP options, utility::vector1< protocols::stepwise::modeler::protein::InputStreamWithResidueInfoOP > &input_streams)
void	protocols::stepwise::sampler::protein::do_set_xyz (pose::Pose const &pose, Size const i, pose::Pose &scratch_pose, Size const i_scratch, core::kinematics::Stub const &stub)
void	protocols::stepwise::sampler::protein::generate_beta_database_test ()
utility::vector1< std::string >	protocols::stepwise::sampler::protein::load_s_and_l ()

Function Documentation

static thread_local basic::Tracer TR ( "protocols.sampler.protein.util"  )

static

Referenced by protocols::stepwise::sampler::protein::get_basic_protein_sampler().