AbscriptMover.cc File Reference

#include <protocols/abinitio/abscript/AbscriptMover.hh>
#include <protocols/abinitio/abscript/AbscriptMoverCreator.hh>
#include <protocols/abinitio/abscript/FragmentCM.hh>
#include <protocols/abinitio/abscript/FragmentJumpCM.hh>
#include <protocols/abinitio/abscript/AbscriptStageMover.hh>
#include <protocols/abinitio/abscript/StagePreparer.hh>
#include <protocols/environment/claims/EnvClaim.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/kinematics/ShortestPathInFoldTree.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/ScoreType.hh>
#include <core/fragment/FragmentIO.hh>
#include <core/fragment/FragSet.hh>
#include <core/fragment/SecondaryStructure.hh>
#include <core/pose/Pose.hh>
#include <core/pack/task/residue_selector/ResidueSelector.fwd.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/simple_moves/SmoothFragmentMover.hh>
#include <protocols/simple_moves/FragmentMover.hh>
#include <protocols/simple_moves/GunnCost.hh>
#include <protocols/canonical_sampling/mc_convergence_checks/util.hh>
#include <protocols/jd2/util.hh>
#include <protocols/jd2/Job.hh>
#include <protocols/jumping/JumpSetup.hh>
#include <protocols/jumping/JumpSample.hh>
#include <protocols/checkpoint/CheckPointer.hh>
#include <utility/tag/Tag.hh>
#include <utility/vector0.hh>
#include <utility/excn/Exceptions.hh>
#include <basic/datacache/DataMap.hh>
#include <basic/prof.hh>
#include <basic/Tracer.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/abinitio.OptionKeys.gen.hh>
#include <basic/options/keys/frags.OptionKeys.gen.hh>
#include <basic/options/keys/fold_cst.OptionKeys.gen.hh>
#include <basic/options/keys/constraints.OptionKeys.gen.hh>
#include <basic/options/keys/jumps.OptionKeys.gen.hh>

Classes
class	protocols::abinitio::abscript::AbscriptMover::StageTracker

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::abinitio
	protocols::abinitio::abscript

Functions
static thread_local basic::Tracer	tr ("protocols.abinitio.abscript.AbscriptMover", basic::t_info)
StageID &	protocols::abinitio::abscript::increment_stageid (StageID &id)
core::scoring::ScoreFunctionOP	protocols::abinitio::abscript::setup_score (std::string const &scorename, basic::options::FileVectorOptionKey optkey)
void	protocols::abinitio::abscript::verify_stage_ID (std::map< std::string, StageID > const &id_map, std::string const &id)

Variables
core::Real const	protocols::abinitio::abscript::DEFAULT_TEMP = 2.0

Detailed Description

Author

Justin Porter

Function Documentation

static thread_local basic::Tracer tr ( "protocols.abinitio.abscript.AbscriptMover"  , basic::t_info    )

static

Referenced by protocols::abinitio::abscript::AbscriptMover::StageTracker::begin_stage(), protocols::abinitio::abscript::AbscriptMover::StageTracker::do_step(), protocols::abinitio::abscript::AbscriptMover::StageTracker::end_stage(), protocols::abinitio::abscript::AbscriptMover::parse_my_tag(), protocols::abinitio::abscript::AbscriptMover::register_preparer(), and protocols::abinitio::abscript::AbscriptMover::register_submover().