FragmentPicker.cc File Reference

Fragment picker - the core part of picking machinery. More...

#include <protocols/frag_picker/FragmentPicker.hh>
#include <protocols/frag_picker/VallProvider.hh>
#include <protocols/frag_picker/VallChunk.hh>
#include <protocols/frag_picker/VallResidue.hh>
#include <protocols/frag_picker/VallChunkFilter.hh>
#include <protocols/frag_picker/FragmentCandidate.hh>
#include <protocols/frag_picker/CandidatesCollector.hh>
#include <protocols/frag_picker/GrabAllCollector.hh>
#include <protocols/frag_picker/quota/QuotaSelector.hh>
#include <protocols/frag_picker/quota/QuotaConfig.hh>
#include <protocols/frag_picker/quota/QuotaCollector.hh>
#include <protocols/frag_picker/quota/ABEGO_SS_Config.hh>
#include <protocols/frag_picker/quota/ABEGO_SS_Pool.hh>
#include <protocols/frag_picker/quota/SecondaryStructurePool.hh>
#include <protocols/frag_picker/BoundedCollector.hh>
#include <protocols/frag_picker/PdbIdChunkFilter.hh>
#include <protocols/frag_picker/BestTotalScoreSelector.hh>
#include <protocols/frag_picker/CustomScoreSelector.hh>
#include <protocols/frag_picker/scores/FragmentScoringMethod.hh>
#include <protocols/frag_picker/scores/FragmentScoreManager.hh>
#include <protocols/frag_picker/scores/SecondarySimilarity.hh>
#include <protocols/frag_picker/scores/PartialSecondarySimilarity.hh>
#include <protocols/frag_picker/scores/ProfileScoreL1.hh>
#include <protocols/frag_picker/scores/RamaScore.hh>
#include <protocols/frag_picker/scores/CSScore.hh>
#include <protocols/frag_picker/scores/ABEGO_SS_Score.hh>
#include <protocols/frag_picker/scores/TorsionBinSimilarity.hh>
#include <protocols/frag_picker/scores/FragmentScoreMap.hh>
#include <protocols/frag_picker/TorsionBinIO.hh>
#include <protocols/frag_picker/Contact.hh>
#include <protocols/frag_picker/ContactCounts.hh>
#include <protocols/frag_picker/nonlocal/NonlocalPair.hh>
#include <basic/options/keys/cm.OptionKeys.gen.hh>
#include <core/sequence/util.hh>
#include <core/sequence/SequenceAlignment.hh>
#include <core/id/SequenceMapping.hh>
#include <core/fragment/FragID.hh>
#include <core/fragment/SecondaryStructure.hh>
#include <core/fragment/ConstantLengthFragSet.hh>
#include <core/import_pose/import_pose.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/io/silent/SilentStructFactory.hh>
#include <core/pose/util.hh>
#include <core/scoring/rms_util.hh>
#include <numeric/model_quality/rms.hh>
#include <core/fragment/util.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/frags.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/constraints.OptionKeys.gen.hh>
#include <basic/prof.hh>
#include <basic/Tracer.hh>
#include <utility/exit.hh>
#include <utility/io/izstream.hh>
#include <utility/io/ozstream.hh>
#include <utility>
#include <sstream>
#include <iostream>
#include <fstream>
#include <ObjexxFCL/format.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::frag_picker

Functions
static thread_local basic::Tracer	protocols::frag_picker::tr ("protocols.frag_picker.FragmentPicker")

Detailed Description

Fragment picker - the core part of picking machinery.

Author

Dominik Gront (dgron.nosp@m.t@ch.nosp@m.em.uw.nosp@m..edu.nosp@m..pl)