BranchAngleOptimizer.cc File Reference

#include <protocols/branch_angle/BranchAngleOptimizer.hh>
#include <protocols/branch_angle/BranchCoef1.hh>
#include <protocols/branch_angle/BranchCoef2.hh>
#include <protocols/branch_angle/BranchParam1.hh>
#include <protocols/branch_angle/BranchParam2.hh>
#include <core/chemical/ResidueType.hh>
#include <core/conformation/Conformation.hh>
#include <core/conformation/Residue.hh>
#include <core/kinematics/tree/Atom.hh>
#include <core/id/AtomID.hh>
#include <basic/database/open.hh>
#include <core/scoring/mm/MMBondAngleLibrary.hh>
#include <core/scoring/mm/MMBondAngleResidueTypeParam.hh>
#include <core/scoring/mm/MMBondAngleResidueTypeParamSet.hh>
#include <core/pose/Pose.hh>
#include <core/chemical/ResidueConnection.hh>
#include <core/scoring/ScoringManager.hh>
#include <basic/Tracer.hh>
#include <numeric/conversions.hh>
#include <numeric/NumericTraits.hh>
#include <numeric/xyz.functions.hh>
#include <utility/io/izstream.hh>
#include <utility/io/ozstream.hh>
#include <utility/vector1.hh>
#include <core/kinematics/AtomTree.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::branch_angle

Functions
static thread_local basic::Tracer	TR ("protocols.moves.branch_angle.BranchAngleOptimizer")
void	protocols::branch_angle::branching_atomid1 (core::pose::Pose const &pose, core::id::AtomID main_atomid1, core::id::AtomID center_atomid, core::id::AtomID main_atomid2, core::id::AtomID &branch_atomid1)
	get all atoms bonded to another More...
void	protocols::branch_angle::branching_atomids2 (core::pose::Pose const &pose, core::id::AtomID main_atomid1, core::id::AtomID center_atomid, core::id::AtomID main_atomid2, core::id::AtomID &branch_atomid1, core::id::AtomID &branch_atomid2)
	get 2 branching atoms ordered according their torsion offsets More...
void	protocols::branch_angle::get_branching_atoms2 (core::kinematics::tree::AtomCOP const main_atom2, core::kinematics::tree::AtomCOP &branch_atom1, core::kinematics::tree::AtomCOP &branch_atom2)
	get 2 siblings of an atom ordered according their torsion offsets More...

Function Documentation

static thread_local basic::Tracer TR ( "protocols.moves.branch_angle.BranchAngleOptimizer"  )

static