protocols::stepwise::screener Namespace Reference

Classes
class	AlignRMSD_Screener
class	AnchorSugarScreener
class	BaseBinMapUpdater
class	BaseCentroidScreener
class	BulgeApplier
class	CentroidDistanceScreener
class	FastForwardToNextResidueAlternative
class	FastForwardToNextRigidBody
class	IntegrationTestBreaker
class	O2PrimeScreener
class	PackScreener
class	PartitionContactScreener
class	PhosphateScreener
class	PoseSelectionScreener
class	ProteinCCD_ClosureScreener
class	ResidueContactScreener
class	RNA_ChainClosableGeometryResidueBasedScreener
class	RNA_ChainClosableGeometryScreener
class	RNA_ChainClosableGeometryStubBasedScreener
class	RNA_ChainClosureScreener
class	SampleApplier
class	Scorer
class	StepWiseResiduePairScreener
class	StepWiseScreener
class	StubApplier
class	StubDistanceScreener
class	SugarInstantiator
class	TagDefinition
class	VDW_BinScreener

Typedefs
typedef utility::pointer::shared_ptr < AlignRMSD_Screener >	AlignRMSD_ScreenerOP
typedef utility::pointer::shared_ptr < AlignRMSD_Screener const >	AlignRMSD_ScreenerCOP
typedef utility::pointer::shared_ptr < AnchorSugarScreener >	AnchorSugarScreenerOP
typedef utility::pointer::shared_ptr < AnchorSugarScreener const >	AnchorSugarScreenerCOP
typedef utility::pointer::shared_ptr < BaseBinMapUpdater >	BaseBinMapUpdaterOP
typedef utility::pointer::shared_ptr < BaseBinMapUpdater const >	BaseBinMapUpdaterCOP
typedef utility::pointer::shared_ptr < BaseCentroidScreener >	BaseCentroidScreenerOP
typedef utility::pointer::shared_ptr < BaseCentroidScreener const >	BaseCentroidScreenerCOP
typedef utility::pointer::shared_ptr < BulgeApplier >	BulgeApplierOP
typedef utility::pointer::shared_ptr < BulgeApplier const >	BulgeApplierCOP
typedef utility::pointer::shared_ptr < CentroidDistanceScreener >	CentroidDistanceScreenerOP
typedef utility::pointer::shared_ptr < CentroidDistanceScreener const >	CentroidDistanceScreenerCOP
typedef utility::pointer::shared_ptr < FastForwardToNextResidueAlternative >	FastForwardToNextResidueAlternativeOP
typedef utility::pointer::shared_ptr < FastForwardToNextResidueAlternative const >	FastForwardToNextResidueAlternativeCOP
typedef utility::pointer::shared_ptr < FastForwardToNextRigidBody >	FastForwardToNextRigidBodyOP
typedef utility::pointer::shared_ptr < FastForwardToNextRigidBody const >	FastForwardToNextRigidBodyCOP
typedef utility::pointer::shared_ptr < IntegrationTestBreaker >	IntegrationTestBreakerOP
typedef utility::pointer::shared_ptr < IntegrationTestBreaker const >	IntegrationTestBreakerCOP
typedef utility::pointer::shared_ptr < O2PrimeScreener >	O2PrimeScreenerOP
typedef utility::pointer::shared_ptr < O2PrimeScreener const >	O2PrimeScreenerCOP
typedef utility::pointer::shared_ptr < PackScreener >	PackScreenerOP
typedef utility::pointer::shared_ptr < PackScreener const >	PackScreenerCOP
typedef utility::pointer::shared_ptr < PartitionContactScreener >	PartitionContactScreenerOP
typedef utility::pointer::shared_ptr < PartitionContactScreener const >	PartitionContactScreenerCOP
typedef utility::pointer::shared_ptr < PhosphateScreener >	PhosphateScreenerOP
typedef utility::pointer::shared_ptr < PhosphateScreener const >	PhosphateScreenerCOP
typedef utility::pointer::owning_ptr < PoseSelectionScreener >	PoseSelectionScreenerOP
typedef utility::pointer::owning_ptr < PoseSelectionScreener const >	PoseSelectionScreenerCOP
typedef utility::pointer::shared_ptr < ProteinCCD_ClosureScreener >	ProteinCCD_ClosureScreenerOP
typedef utility::pointer::shared_ptr < ProteinCCD_ClosureScreener const >	ProteinCCD_ClosureScreenerCOP
typedef utility::pointer::shared_ptr < ResidueContactScreener >	ResidueContactScreenerOP
typedef utility::pointer::shared_ptr < ResidueContactScreener const >	ResidueContactScreenerCOP
typedef utility::pointer::shared_ptr < RNA_ChainClosableGeometryResidueBasedScreener >	RNA_ChainClosableGeometryResidueBasedScreenerOP
typedef utility::pointer::shared_ptr < RNA_ChainClosableGeometryResidueBasedScreener const >	RNA_ChainClosableGeometryResidueBasedScreenerCOP
typedef utility::pointer::shared_ptr < RNA_ChainClosableGeometryScreener >	RNA_ChainClosableGeometryScreenerOP
typedef utility::pointer::shared_ptr < RNA_ChainClosableGeometryScreener const >	RNA_ChainClosableGeometryScreenerCOP
typedef utility::pointer::shared_ptr < RNA_ChainClosableGeometryStubBasedScreener >	RNA_ChainClosableGeometryStubBasedScreenerOP
typedef utility::pointer::shared_ptr < RNA_ChainClosableGeometryStubBasedScreener const >	RNA_ChainClosableGeometryStubBasedScreenerCOP
typedef utility::pointer::shared_ptr < RNA_ChainClosureScreener >	RNA_ChainClosureScreenerOP
typedef utility::pointer::shared_ptr < RNA_ChainClosureScreener const >	RNA_ChainClosureScreenerCOP
typedef utility::pointer::shared_ptr < SampleApplier >	SampleApplierOP
typedef utility::pointer::shared_ptr < SampleApplier const >	SampleApplierCOP
typedef utility::pointer::shared_ptr < Scorer >	ScorerOP
typedef utility::pointer::shared_ptr < Scorer const >	ScorerCOP
typedef utility::pointer::shared_ptr < StepWiseResiduePairScreener >	StepWiseResiduePairScreenerOP
typedef utility::pointer::shared_ptr < StepWiseResiduePairScreener const >	StepWiseResiduePairScreenerCOP
typedef utility::pointer::shared_ptr < StepWiseScreener >	StepWiseScreenerOP
typedef utility::pointer::shared_ptr < StepWiseScreener const >	StepWiseScreenerCOP
typedef utility::pointer::shared_ptr < StubApplier >	StubApplierOP
typedef utility::pointer::shared_ptr < StubApplier const >	StubApplierCOP
typedef utility::pointer::shared_ptr < StubDistanceScreener >	StubDistanceScreenerOP
typedef utility::pointer::shared_ptr < StubDistanceScreener const >	StubDistanceScreenerCOP
typedef utility::pointer::shared_ptr < SugarInstantiator >	SugarInstantiatorOP
typedef utility::pointer::shared_ptr < SugarInstantiator const >	SugarInstantiatorCOP
typedef utility::pointer::shared_ptr < TagDefinition >	TagDefinitionOP
typedef utility::pointer::shared_ptr < TagDefinition const >	TagDefinitionCOP
typedef utility::pointer::shared_ptr < VDW_BinScreener >	VDW_BinScreenerOP
typedef utility::pointer::shared_ptr < VDW_BinScreener const >	VDW_BinScreenerCOP

Enumerations
enum	StepWiseScreenerType {   NONE, ALIGN_RMSD, ANCHOR_SUGAR, ATR_REP,   BASE_BIN_MAP, BASE_CENTROID, BULGE_APPLIER, CENTROID_DISTANCE,   FAST_FORWARD_TO_NEXT_RIGID_BODY, FAST_FORWARD_TO_NEXT_RESIDUE_ALTERNATIVE, INTEGRATION_TEST, O2PRIME_PACK,   PACK, PARTITION_CONTACT, PHOSPHATE_PACK, POSE_SELECTION,   PROTEIN_ATR_REP, RESIDUE_APPLIER, RESIDUE_CONTACT, PROTEIN_CCD_CLOSURE,   RNA_CHAIN_CLOSURE, RNA_CHAIN_CLOSABLE_GEOMETRY, RNA_CHAIN_CLOSABLE_GEOMETRY_RESIDUE_BASED, RNA_CHAIN_CLOSABLE_GEOMETRY_STUB_BASED,   SAMPLE_APPLIER, SAMPLE_APPLIER_WITH_RESIDUE_LIST, SCORER, SIMPLE_POSE_SELECTION,   SIMPLE_RMSD, STUB_APPLIER, STUB_DISTANCE, SUGAR_INSTANTIATOR,   TAG_DEFINITION, VDW_ATR_REP, VDW_BIN }

Functions
void	fast_forward_to_next_residue_pair (sampler::StepWiseSamplerBaseOP sampler, Size const res1, Size const res2)

Typedef Documentation

typedef utility::pointer::shared_ptr< AlignRMSD_Screener const > protocols::stepwise::screener::AlignRMSD_ScreenerCOP

typedef utility::pointer::shared_ptr< AlignRMSD_Screener > protocols::stepwise::screener::AlignRMSD_ScreenerOP

typedef utility::pointer::shared_ptr< AnchorSugarScreener const > protocols::stepwise::screener::AnchorSugarScreenerCOP

typedef utility::pointer::shared_ptr< AnchorSugarScreener > protocols::stepwise::screener::AnchorSugarScreenerOP

typedef utility::pointer::shared_ptr< BaseBinMapUpdater const > protocols::stepwise::screener::BaseBinMapUpdaterCOP

typedef utility::pointer::shared_ptr< BaseBinMapUpdater > protocols::stepwise::screener::BaseBinMapUpdaterOP

typedef utility::pointer::shared_ptr< BaseCentroidScreener const > protocols::stepwise::screener::BaseCentroidScreenerCOP

typedef utility::pointer::shared_ptr< BaseCentroidScreener > protocols::stepwise::screener::BaseCentroidScreenerOP

typedef utility::pointer::shared_ptr< BulgeApplier const > protocols::stepwise::screener::BulgeApplierCOP

typedef utility::pointer::shared_ptr< BulgeApplier > protocols::stepwise::screener::BulgeApplierOP

typedef utility::pointer::shared_ptr< CentroidDistanceScreener const > protocols::stepwise::screener::CentroidDistanceScreenerCOP

typedef utility::pointer::shared_ptr< CentroidDistanceScreener > protocols::stepwise::screener::CentroidDistanceScreenerOP

typedef utility::pointer::shared_ptr< FastForwardToNextResidueAlternative const > protocols::stepwise::screener::FastForwardToNextResidueAlternativeCOP

typedef utility::pointer::shared_ptr< FastForwardToNextResidueAlternative > protocols::stepwise::screener::FastForwardToNextResidueAlternativeOP

typedef utility::pointer::shared_ptr< FastForwardToNextRigidBody const > protocols::stepwise::screener::FastForwardToNextRigidBodyCOP

typedef utility::pointer::shared_ptr< FastForwardToNextRigidBody > protocols::stepwise::screener::FastForwardToNextRigidBodyOP

typedef utility::pointer::shared_ptr< IntegrationTestBreaker const > protocols::stepwise::screener::IntegrationTestBreakerCOP

typedef utility::pointer::shared_ptr< IntegrationTestBreaker > protocols::stepwise::screener::IntegrationTestBreakerOP

typedef utility::pointer::shared_ptr< O2PrimeScreener const > protocols::stepwise::screener::O2PrimeScreenerCOP

typedef utility::pointer::shared_ptr< O2PrimeScreener > protocols::stepwise::screener::O2PrimeScreenerOP

typedef utility::pointer::shared_ptr< PackScreener const > protocols::stepwise::screener::PackScreenerCOP

typedef utility::pointer::shared_ptr< PackScreener > protocols::stepwise::screener::PackScreenerOP

typedef utility::pointer::shared_ptr< PartitionContactScreener const > protocols::stepwise::screener::PartitionContactScreenerCOP

typedef utility::pointer::shared_ptr< PartitionContactScreener > protocols::stepwise::screener::PartitionContactScreenerOP

typedef utility::pointer::shared_ptr< PhosphateScreener const > protocols::stepwise::screener::PhosphateScreenerCOP

typedef utility::pointer::shared_ptr< PhosphateScreener > protocols::stepwise::screener::PhosphateScreenerOP

typedef utility::pointer::owning_ptr< PoseSelectionScreener const > protocols::stepwise::screener::PoseSelectionScreenerCOP

typedef utility::pointer::owning_ptr< PoseSelectionScreener > protocols::stepwise::screener::PoseSelectionScreenerOP

typedef utility::pointer::shared_ptr< ProteinCCD_ClosureScreener const > protocols::stepwise::screener::ProteinCCD_ClosureScreenerCOP

typedef utility::pointer::shared_ptr< ProteinCCD_ClosureScreener > protocols::stepwise::screener::ProteinCCD_ClosureScreenerOP

typedef utility::pointer::shared_ptr< ResidueContactScreener const > protocols::stepwise::screener::ResidueContactScreenerCOP

typedef utility::pointer::shared_ptr< ResidueContactScreener > protocols::stepwise::screener::ResidueContactScreenerOP

typedef utility::pointer::shared_ptr< RNA_ChainClosableGeometryResidueBasedScreener const > protocols::stepwise::screener::RNA_ChainClosableGeometryResidueBasedScreenerCOP

typedef utility::pointer::shared_ptr< RNA_ChainClosableGeometryResidueBasedScreener > protocols::stepwise::screener::RNA_ChainClosableGeometryResidueBasedScreenerOP

typedef utility::pointer::shared_ptr< RNA_ChainClosableGeometryScreener const > protocols::stepwise::screener::RNA_ChainClosableGeometryScreenerCOP

typedef utility::pointer::shared_ptr< RNA_ChainClosableGeometryScreener > protocols::stepwise::screener::RNA_ChainClosableGeometryScreenerOP

typedef utility::pointer::shared_ptr< RNA_ChainClosableGeometryStubBasedScreener const > protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreenerCOP

typedef utility::pointer::shared_ptr< RNA_ChainClosableGeometryStubBasedScreener > protocols::stepwise::screener::RNA_ChainClosableGeometryStubBasedScreenerOP

typedef utility::pointer::shared_ptr< RNA_ChainClosureScreener const > protocols::stepwise::screener::RNA_ChainClosureScreenerCOP

typedef utility::pointer::shared_ptr< RNA_ChainClosureScreener > protocols::stepwise::screener::RNA_ChainClosureScreenerOP

typedef utility::pointer::shared_ptr< SampleApplier const > protocols::stepwise::screener::SampleApplierCOP

typedef utility::pointer::shared_ptr< SampleApplier > protocols::stepwise::screener::SampleApplierOP

typedef utility::pointer::shared_ptr< Scorer const > protocols::stepwise::screener::ScorerCOP

typedef utility::pointer::shared_ptr< Scorer > protocols::stepwise::screener::ScorerOP

typedef utility::pointer::shared_ptr< StepWiseResiduePairScreener const > protocols::stepwise::screener::StepWiseResiduePairScreenerCOP

typedef utility::pointer::shared_ptr< StepWiseResiduePairScreener > protocols::stepwise::screener::StepWiseResiduePairScreenerOP

typedef utility::pointer::shared_ptr< StepWiseScreener const > protocols::stepwise::screener::StepWiseScreenerCOP

typedef utility::pointer::shared_ptr< StepWiseScreener > protocols::stepwise::screener::StepWiseScreenerOP

typedef utility::pointer::shared_ptr< StubApplier const > protocols::stepwise::screener::StubApplierCOP

typedef utility::pointer::shared_ptr< StubApplier > protocols::stepwise::screener::StubApplierOP

typedef utility::pointer::shared_ptr< StubDistanceScreener const > protocols::stepwise::screener::StubDistanceScreenerCOP

typedef utility::pointer::shared_ptr< StubDistanceScreener > protocols::stepwise::screener::StubDistanceScreenerOP

typedef utility::pointer::shared_ptr< SugarInstantiator const > protocols::stepwise::screener::SugarInstantiatorCOP

typedef utility::pointer::shared_ptr< SugarInstantiator > protocols::stepwise::screener::SugarInstantiatorOP

typedef utility::pointer::shared_ptr< TagDefinition const > protocols::stepwise::screener::TagDefinitionCOP

typedef utility::pointer::shared_ptr< TagDefinition > protocols::stepwise::screener::TagDefinitionOP

typedef utility::pointer::shared_ptr< VDW_BinScreener const > protocols::stepwise::screener::VDW_BinScreenerCOP

typedef utility::pointer::shared_ptr< VDW_BinScreener > protocols::stepwise::screener::VDW_BinScreenerOP

Enumeration Type Documentation

enum protocols::stepwise::screener::StepWiseScreenerType

Enumerator
NONE
ALIGN_RMSD
ANCHOR_SUGAR
ATR_REP
BASE_BIN_MAP
BASE_CENTROID
BULGE_APPLIER
CENTROID_DISTANCE
FAST_FORWARD_TO_NEXT_RIGID_BODY
FAST_FORWARD_TO_NEXT_RESIDUE_ALTERNATIVE
INTEGRATION_TEST
O2PRIME_PACK
PACK
PARTITION_CONTACT
PHOSPHATE_PACK
POSE_SELECTION
PROTEIN_ATR_REP
RESIDUE_APPLIER
RESIDUE_CONTACT
PROTEIN_CCD_CLOSURE
RNA_CHAIN_CLOSURE
RNA_CHAIN_CLOSABLE_GEOMETRY
RNA_CHAIN_CLOSABLE_GEOMETRY_RESIDUE_BASED
RNA_CHAIN_CLOSABLE_GEOMETRY_STUB_BASED
SAMPLE_APPLIER
SAMPLE_APPLIER_WITH_RESIDUE_LIST
SCORER
SIMPLE_POSE_SELECTION
SIMPLE_RMSD
STUB_APPLIER
STUB_DISTANCE
SUGAR_INSTANTIATOR
TAG_DEFINITION
VDW_ATR_REP
VDW_BIN

Function Documentation

void protocols::stepwise::screener::fast_forward_to_next_residue_pair	(	sampler::StepWiseSamplerBaseOP	sampler,
		Size const	res1,
		Size const	res2
	)

References protocols::stepwise::sampler::RIGID_BODY_WITH_RESIDUE_ALTERNATIVES, and protocols::stepwise::sampler::RIGID_BODY_WITH_RESIDUE_LIST.

Referenced by protocols::stepwise::screener::StepWiseResiduePairScreener::fast_forward(), and protocols::stepwise::screener::RNA_ChainClosureScreener::fast_forward().