Ramady.cc File Reference

Header for the Rana energy repair code, Ramady. More...

#include <protocols/relax/Ramady.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/conformation/Residue.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <core/pose/Pose.hh>
#include <core/scoring/constraints/CoordinateConstraint.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/ScoreFunction.hh>
#include <basic/Tracer.hh>
#include <utility/exit.hh>
#include <protocols/loops/Loops.hh>
#include <protocols/moves/Mover.fwd.hh>
#include <utility/vector1.hh>
#include <numeric/random/random.hh>
#include <core/kinematics/Jump.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::relax

Functions
static thread_local basic::Tracer	TR ("protocols.relax.Ramady")
void	protocols::relax::add_coordinate_constraints_to_pose (core::pose::Pose &pose, const core::pose::Pose &constraint_target_pose, protocols::loops::Loops &exclude_regions)
bool	protocols::relax::rama_list_pred (const std::pair< core::Size, core::Real > &left, const std::pair< core::Size, core::Real > &right)
void	protocols::relax::fix_worst_bad_ramas (core::pose::Pose &original_pose, core::Size how_many, core::Real skip_prob, core::Real limit_RMS, core::Real limit_rama)

Detailed Description

Header for the Rana energy repair code, Ramady.

Author

Mike Tyka

Function Documentation

static thread_local basic::Tracer TR ( "protocols.relax.Ramady"  )

static