FragmentCrmsd.cc File Reference

Scores fragments by disulfide-linke Calpha distances. More...

#include <protocols/frag_picker/scores/FragmentCrmsd.hh>
#include <protocols/frag_picker/VallChunk.hh>
#include <protocols/frag_picker/VallResidue.hh>
#include <protocols/frag_picker/VallProvider.hh>
#include <protocols/frag_picker/scores/FragmentScoreMap.hh>
#include <protocols/frag_picker/FragmentCandidate.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <core/conformation/Residue.hh>
#include <basic/Tracer.hh>
#include <numeric/model_quality/rms.hh>
#include <ObjexxFCL/FArray2D.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <basic/prof.hh>
#include <core/id/NamedAtomID.hh>
#include <core/import_pose/import_pose.hh>
#include <core/io/pdb/pose_io.hh>
#include <core/pose/Pose.hh>
#include <utility/io/izstream.hh>
#include <iostream>
#include <string>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::frag_picker
	protocols::frag_picker::scores

Functions
static thread_local basic::Tracer	protocols::frag_picker::scores::trRmsScore ("protocols.frag_picker.scores.FragmentCrmsd")

Detailed Description

Scores fragments by disulfide-linke Calpha distances.

Object that scores a fragment by root mean square deviation of Psi && Psi dihedrals.

Object that scores a fragment by root mean square deviation of Phi && Psi dihedrals.

Object that scores a fragment by its crmsd to the native.

Author

Robert Vernon

Dominik Gront (dgron.nosp@m.t@ch.nosp@m.em.uw.nosp@m..edu.nosp@m..pl)

Nikolas Sgourakis sgour.nosp@m.n@u..nosp@m.w.edu