 |
Rosetta Protocols
2015.25
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|
Rosetta Protocols
2015.25
|
Files | |
| file | ABEGO_SS_Score.cc |
| scores a fragment by secondary structure similarity | |
| file | ABEGO_SS_Score.hh |
| scores a fragment by secondary structure similarity | |
| file | AdaptiveScoreHistogram.cc |
| file | AdaptiveScoreHistogram.fwd.hh |
| AdaptiveScoreHistogram forward declaration. | |
| file | AdaptiveScoreHistogram.hh |
| A very basic histogram to keep statistics of scores. | |
| file | AmbigCSScore.cc |
| Object that scores a fragment by target-observed/vall-predicted chemical shift distances. | |
| file | AmbigCSScore.hh |
| Object that scores a fragment by its crmsd to the native. | |
| file | AtomBasedConstraintsScore.cc |
| file | AtomBasedConstraintsScore.fwd.hh |
| AtomBasedConstraintsScore forward declaration. | |
| file | AtomBasedConstraintsScore.hh |
| file | AtomPairConstraintsScore.cc |
| file | AtomPairConstraintsScore.fwd.hh |
| file | AtomPairConstraintsScore.hh |
| file | BFactor.cc |
| a base class for fragment scoring | |
| file | BFactor.hh |
| a base class for fragment scoring | |
| file | CachingScoringMethod.hh |
| adds cashing functionality to a FragmentScoringMethod object | |
| file | ConstScore.hh |
| score that adds a constant (so basically it does nothing!) | |
| file | CSScore.cc |
| Object that scores a fragment by target-observed/vall-predicted chemical shift distances. | |
| file | CSScore.hh |
| Object that scores a fragment by its crmsd to the native. | |
| file | DihedralConstraintsScore.cc |
| Calculates a score based on how close are dihdral angles in a Vall chunk to their target values. | |
| file | DihedralConstraintsScore.fwd.hh |
| DihedralConstraintsScore forward declaration. | |
| file | DihedralConstraintsScore.hh |
| file | DisulfideDistance.cc |
| file | DisulfideDistance.hh |
| file | DisulfideIdentity.cc |
| a base class for fragment scoring | |
| file | DisulfideIdentity.hh |
| a base class for fragment scoring | |
| file | FourAtomsConstraintData.cc |
| file | FourAtomsConstraintData.fwd.hh |
| file | FourAtomsConstraintData.hh |
| provides a holder for data necessary to create a single constraint based on four atoms | |
| file | fragment_scoring_utilities.cc |
| file | fragment_scoring_utilities.hh |
| functions and data types common for fragment scoring | |
| file | FragmentAllAtomCrmsd.cc |
| Object that scores a fragment by its crmsd to the native. | |
| file | FragmentAllAtomCrmsd.hh |
| Object that scores a fragment by its crmsd to the native. | |
| file | FragmentChunkCrms.cc |
| file | FragmentChunkCrms.hh |
| Object that scores a fragment by its tmscore to the native. | |
| file | FragmentCrmsd.cc |
| Scores fragments by disulfide-linke Calpha distances. | |
| file | FragmentCrmsd.hh |
| Object that scores a fragment by its crmsd to the native. | |
| file | FragmentCrmsdResDepth.cc |
| Object that scores a fragment by its crmsd to the native. | |
| file | FragmentCrmsdResDepth.hh |
| Object that scores a fragment by its crmsd and residue depth to the native. | |
| file | FragmentDME.cc |
| Object that scores a fragment by its Distance Matrix Error (DME) to the native. | |
| file | FragmentDME.hh |
| Object that scores a fragment by its Distance Matrix Error (DME) to the native. | |
| file | FragmentScoreManager.cc |
| file | FragmentScoreManager.fwd.hh |
| FragmentScoreManager forward declaration. | |
| file | FragmentScoreManager.hh |
| FragmentScoreManager forward declaration. | |
| file | FragmentScoreMap.fwd.hh |
| FragmentScoreMap forward declaration. | |
| file | FragmentScoreMap.hh |
| file | FragmentScoringMethod.fwd.hh |
| file | FragmentScoringMethod.hh |
| FragmentScoringMethod forward declaration. | |
| file | GunnCost.cc |
| file | GunnCost.hh |
| file | GunnCostScore.cc |
| Object that scores a fragment by its crmsd to the native. | |
| file | GunnCostScore.hh |
| Object that scores a fragment by Gunn cost function (how it fits to the local structure) | |
| file | HydrophobicityProfileSimilarity.cc |
| a base class for fragment scoring | |
| file | HydrophobicityProfileSimilarity.hh |
| Object that scores a fragment by hydrophobicity. | |
| file | HydrophobicitySimilarity.cc |
| a base class for fragment scoring | |
| file | HydrophobicitySimilarity.hh |
| Object that scores a fragment by hydrophobicity. | |
| file | InterbondAngleScore.cc |
| file | InterbondAngleScore.fwd.hh |
| file | InterbondAngleScore.hh |
| file | JCoupling.cc |
| file | JCoupling.hh |
| file | LAMBEGO_Similarity.cc |
| file | LAMBEGO_Similarity.hh |
| file | MidPhiOut.cc |
| file | MidPhiOut.hh |
| Scores fragments by disulfide-linke Calpha distances. | |
| file | MidPsiOut.cc |
| file | MidPsiOut.hh |
| Object that scores a fragment by its crmsd to the native. | |
| file | PartialSecondarySimilarity.cc |
| scores a fragment by secondary structure similarity but throws out the worst 20% of the residue matches | |
| file | PartialSecondarySimilarity.hh |
| file | PCS_FragDistance.cc |
| file | PCS_FragDistance.hh |
| file | Phi.cc |
| a base class for fragment scoring | |
| file | Phi.hh |
| Object that scores a fragment by predicted Phi torsions. | |
| file | PhiPsiRmsd.cc |
| file | PhiPsiRmsd.hh |
| Object that scores a fragment by its crmsd to the native. | |
| file | PhiPsiSquareWell.cc |
| file | PhiPsiSquareWell.hh |
| file | ProfileScore.cc |
| scores a fragment by an amino acid sequence identity | |
| file | ProfileScore.fwd.hh |
| file | ProfileScore.hh |
| FragmentScoringMethod forward declaration. | |
| file | ProfileScoreBlosum62.cc |
| file | ProfileScoreBlosum62.hh |
| file | ProfileScoreDistWeight.cc |
| file | ProfileScoreDistWeight.hh |
| file | ProfileScoreL1.cc |
| file | ProfileScoreL1.hh |
| file | ProfileScoreStructL1.cc |
| scores a fragment using structure based profiles | |
| file | ProfileScoreStructL1.hh |
| scores a fragment by L1 structure based profile score | |
| file | ProfileScoreSubMatrix.cc |
| scores a fragment by substitution matrix (e.g. Blosum62) profile score | |
| file | ProfileScoreSubMatrix.hh |
| scores a fragment by substitution matrix (e.g. Blosum62) profile score | |
| file | ProlinePhiScore.cc |
| file | ProlinePhiScore.hh |
| a base class for fragment scoring | |
| file | Psi.cc |
| a base class for fragment scoring | |
| file | Psi.hh |
| Object that scores a fragment by predicted Psi torsions. | |
| file | PValuedFragmentScoreManager.cc |
| file | PValuedFragmentScoreManager.hh |
| Score manager that stores statistics of all scores. This allows estimate p-value for a score. | |
| file | RamaScore.cc |
| file | RamaScore.hh |
| a base class for fragment scoring | |
| file | RDCScore.cc |
| Object that scores a fragment by its RDC. | |
| file | RDCScore.hh |
| Object that scores a fragment by its crmsd to the native. | |
| file | ScoreEValuator.cc |
| scores a fragment by an amino acid sequence identity | |
| file | ScoreEValuator.hh |
| Object that scores a fragment by its crmsd to the native. | |
| file | SecondaryIdentity.cc |
| scores a fragment by an amino acid sequence identity | |
| file | SecondaryIdentity.hh |
| scores a fragment by an amino acid sequence identity | |
| file | SecondarySimilarity.cc |
| scores a fragment by secondary structure similarity | |
| file | SecondarySimilarity.hh |
| scores a fragment by secondary structure similarity | |
| file | SequenceIdentity.cc |
| a base class for fragment scoring | |
| file | SequenceIdentity.hh |
| a base class for fragment scoring | |
| file | SolventAccessibility.cc |
| a base class for fragment scoring | |
| file | SolventAccessibility.hh |
| Object that scores a fragment by predicted solvent accessibility. | |
| file | TalosSSSimilarity.cc |
| scores a fragment by secondary structure similarity | |
| file | TalosSSSimilarity.hh |
| scores a fragment by secondary structure similarity | |
| file | TorsionBinSimilarity.cc |
| file | TorsionBinSimilarity.hh |
1.8.7