dna Directory Reference

Directory dependency graph for dna:

Files
file	DesignProteinBackboneAroundDNA.cc
	performs a round flexible backbone sampling/design. (Interim(?) encapsulation of some loose code in a mover class.)
file	DesignProteinBackboneAroundDNA.fwd.hh
file	DesignProteinBackboneAroundDNA.hh
	performs a round flexible backbone sampling/design. (Interim(?) encapsulation of some loose code in a mover class.)
file	DesignProteinBackboneAroundDNACreator.hh
file	DnaChains.cc
file	DnaChains.fwd.hh
file	DnaChains.hh
	a descriptive but lightweight class to keep track of (usually basepaired) dna chains
file	DnaDesignDef.cc
file	DnaDesignDef.fwd.hh
file	DnaDesignDef.hh
file	DnaInterfaceFinder.cc
file	DnaInterfaceFinder.fwd.hh
file	DnaInterfaceFinder.hh
file	DnaInterfaceMinMover.cc
file	DnaInterfaceMinMover.fwd.hh
file	DnaInterfaceMinMover.hh
	A mover that minimizes protein residues near DNA.
file	DnaInterfaceMinMoverCreator.hh
file	DnaInterfaceMultiStateDesign.cc
file	DnaInterfaceMultiStateDesign.fwd.hh
file	DnaInterfaceMultiStateDesign.hh
file	DnaInterfaceMultiStateDesignCreator.hh
file	DnaInterfacePacker.cc
file	DnaInterfacePacker.fwd.hh
file	DnaInterfacePacker.hh
	Intended to perform anything one would want to do in a DNA interface that uses a single incarnation of the RotamerSets/InteractionGraph combo.
file	DnaInterfacePackerCreator.hh
file	DNAParameters.cc
	A class to query for base-paired partners as well as base pair and base step parameters.
file	DNAParameters.fwd.hh
file	DNAParameters.hh
	A class to query for base-paired partners as well as base pair and base step parameters.
file	PDBOutput.cc
file	PDBOutput.fwd.hh
file	PDBOutput.hh
file	RestrictDesignToProteinDNAInterface.cc
file	RestrictDesignToProteinDNAInterface.fwd.hh
file	RestrictDesignToProteinDNAInterface.hh
	When operated on a PackerTask, pack/design is limited to the protein-DNA interface.
file	RestrictDesignToProteinDNAInterfaceCreator.hh
file	RotamerDNAHBondFilter.cc
	filters rotamers for contact to DNA in an -ex dependent manner
file	RotamerDNAHBondFilter.fwd.hh
file	RotamerDNAHBondFilter.hh
	filters rotamers for contact to DNA in an -ex dependent manner
file	SeparateDnaFromNonDna.cc
file	SeparateDnaFromNonDna.fwd.hh
file	SeparateDnaFromNonDna.hh
file	SeparateDnaFromNonDnaCreator.hh
file	typedefs.hh
file	util.cc
file	util.hh
file	WatsonCrickRotamerCouplings.cc
file	WatsonCrickRotamerCouplings.fwd.hh
file	WatsonCrickRotamerCouplings.hh
	When operated on a PackerTask, adds RotamerCouplings to it that will trigger the use of a FixbbCoupledRotamerAnnealer by pack_rotamers, which will make base-paired DNA rotamer substitutions.
file	WatsonCrickRotamerCouplingsCreator.hh