pdb2fasta Namespace Reference

Variables
list	pdbnames = argv[1:]
	outfile = pdbname
int	removechain = 0
	netpdbname = pdbname
tuple	lines = open(netpdbname,'r')
	fastaid = stdout
string	oldresnum = ' '
int	count = 0
	line_edit = line
list	resnum = line_edit[23:26]
list	longname = line_edit[17:20]
string	newnum = '%3d'

Variable Documentation

int pdb2fasta.count = 0

pdb2fasta.fastaid = stdout

list pdb2fasta.line_edit = line

tuple pdb2fasta.lines = open(netpdbname,'r')

list pdb2fasta.longname = line_edit[17:20]

pdb2fasta.netpdbname = pdbname

string pdb2fasta.newnum = '%3d'

pdb2fasta.oldresnum = ' '

pdb2fasta.outfile = pdbname

list pdb2fasta.pdbnames = argv[1:]

Referenced by sequence_tolerance_main().

int pdb2fasta.removechain = 0

list pdb2fasta.resnum = line_edit[23:26]