loops_from_density.cc File Reference

#include <core/types.hh>
#include <core/conformation/Residue.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueTypeSet.fwd.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/electron_density/ElectronDensity.hh>
#include <core/pose/Pose.hh>
#include <core/pose/Pose.fwd.hh>
#include <devel/init.hh>
#include <basic/options/option.hh>
#include <core/scoring/dssp/Dssp.hh>
#include <utility/vector1.hh>
#include <utility/io/izstream.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <utility/excn/Exceptions.hh>
#include <basic/Tracer.hh>
#include <fstream>
#include <iostream>
#include <string>
#include <core/import_pose/import_pose.hh>
#include <protocols/electron_density/SetupForDensityScoringMover.hh>
#include <protocols/moves/MoverStatistics.hh>

Namespaces
	loops_from_density

Functions
static thread_local basic::Tracer	TR ("loops_from_density_main")
int	main (int argc, char *argv[])

Variables
RealOptionKey	loops_from_density::frac_loop ("loops_from_density:frac_loop")
RealOptionKey	loops_from_density::frac_rigid ("loops_from_density:frac_rigid")
IntegerOptionKey	loops_from_density::max_helix_melt ("loops_from_density:max_helix_melt")
IntegerOptionKey	loops_from_density::max_strand_melt ("loops_from_density:max_strand_melt")

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

References utility::options::OptionCollection::add(), utility::io::oc::cout, utility::options::ScalarOption_T_< K, T >::def(), loops_from_density::frac_loop, loops_from_density::frac_rigid, basic::options::OptionKeys::in::file::fullatom, ObjexxFCL::getline(), color_pdb::i, devel::init(), app.surface_docking.surface_docking::input, basic::options::OptionKeys::frags::j, basic::options::OptionKeys::in::file::l, make_symmdef_file_denovo::length, line, demo.D080_Loop_modeling::loop_end, max(), loops_from_density::max_helix_melt, loops_from_density::max_strand_melt, min(), utility::excn::EXCN_Base::msg(), clean_pdb_keep_ligand::nres, basic::options::option, basic::options::OptionKeys::canonical_sampling::out::out, app.surface_docking.surface_docking::pose, basic::options::OptionKeys::in::file::s, PyMOL_demo::scorefxn, basic::options::OptionKeys::frags::scoring::scoring, basic::options::OptionKeys::mp::secstruct, utility_exit_with_message, and Equations::vector().

static thread_local basic::Tracer TR ( "loops_from_density_main"  )

static