pymol_silent Namespace Reference

Classes
class	CoordinateDecoder
class	PDBFile
class	ResidueDatabase

Functions
def	parse_res
def	parse_sequence
def	load_struct
def	checktags
def	silent_load
def	silent_tags

Variables
	cmd = None
tuple	DATABASE = ResidueDatabase()

Function Documentation

def pymol_silent.checktags	(		tag,
			rextags
	)

Return true if tag matches a (compiled regex) entry in rextags, false if not.

References ObjexxFCL.len().

Referenced by silent_load().

def pymol_silent.load_struct	(		tag,
			seqline,
			f
	)

References ObjexxFCL.len(), parse_res(), and parse_sequence().

Referenced by silent_load().

def pymol_silent.parse_res	(		tag,
			resi,
			residue,
			coords,
			pdb
	)

References basic::options::OptionKeys::stepwise.enumerate, and ObjexxFCL.len().

Referenced by load_struct().

def pymol_silent.parse_sequence

(

annotated

)

References extract_scores_and_constraints.join, and ObjexxFCL.len().

Referenced by load_struct().

def pymol_silent.silent_load	(		filename,
			tags,
			kwds
	)

silent_load filename, [tags]

Load the given tags from the given Rosetta binary-format silent file into appropriately named structures in Pymol.
Tags can be zero or more comma separated tag. If no tags are given, load all availible tags.
Python-style regex expansion can be used to match multiple tags. Regexes must match the entire tag to be accepted.

References checktags(), load_struct(), basic::database.open(), and ObjexxFCL.strip().

Referenced by silent_tags().

def pymol_silent.silent_tags

(

filename

)

silent_tags filename

Show all the availible tags associated with the given Rosetta binary-format silent file.

References basic::options::OptionKeys::stepwise.enumerate, ObjexxFCL.len(), max(), basic::database.open(), and silent_load().

Variable Documentation

pymol_silent.cmd = None

Referenced by svm_load_model().

tuple pymol_silent.DATABASE = ResidueDatabase()