mp_transform.cc File Reference

#include <devel/init.hh>
#include <core/conformation/membrane/MembraneInfo.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/moves/MoverContainer.hh>
#include <protocols/membrane/AddMembraneMover.hh>
#include <protocols/membrane/OptimizeMembranePositionMover.hh>
#include <protocols/membrane/SetMembranePositionMover.hh>
#include <protocols/membrane/TransformIntoMembraneMover.hh>
#include <protocols/membrane/visualize/VisualizeEmbeddingMover.hh>
#include <protocols/membrane/geometry/EmbeddingDef.hh>
#include <apps/benchmark/performance/init_util.hh>
#include <core/types.hh>
#include <core/pose/Pose.hh>
#include <core/import_pose/import_pose.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/mp.OptionKeys.gen.hh>
#include <protocols/jd2/JobDistributor.hh>
#include <protocols/jd2/Job.hh>
#include <basic/Tracer.hh>
#include <utility/excn/EXCN_Base.hh>
#include <utility/string_util.hh>
#include <utility/io/ozstream.hh>
#include <utility/file/file_sys_util.hh>
#include <cstdlib>
#include <string>
#include <cmath>

Functions
std::string	output_filename (std::string infilename)
	Create output filename. More...
int	main (int argc, char *argv[])

Variables
static basic::Tracer	TR ("apps.public.membrane.mp_transform")

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

References basic::options::OptionKeys::mp::setup::center, utility::io::oc::cout, devel::init(), basic::options::OptionKeys::jd2::jd2, basic::options::OptionKeys::abinitio::membrane, utility::excn::EXCN_Base::msg(), basic::options::OptionKeys::mp::setup::normal, basic::options::OptionKeys::mp::transform::optimize_embedding, basic::options::option, options, output_filename(), app.surface_docking.surface_docking::pose, basic::options::OptionKeys::in::file::s, basic::options::OptionKeys::in::file::seq, basic::options::OptionKeys::mp::transform::transform, basic::options::OptionKeys::inout::dbms::user, and basic::options::OptionKeys::mp::visualize::visualize.

std::string output_filename

(

std::string

infilename

)

Create output filename.

References utility::file::file_basename(), basic::options::option, options, basic::options::OptionKeys::cp::output, basic::options::OptionKeys::in::path::path, basic::options::OptionKeys::out::path::pdb, utility::replace_in(), and basic::options::OptionKeys::inout::dbms::user.

Referenced by filter_combine_long_loop(), and main().

Variable Documentation

basic::Tracer TR("apps.public.membrane.mp_transform")

static