rna_denovo.cc File Reference

#include <core/types.hh>
#include <core/chemical/AA.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/scoring/constraints/ConstraintSet.fwd.hh>
#include <core/scoring/constraints/ConstraintIO.hh>
#include <core/sequence/util.hh>
#include <core/import_pose/pose_stream/SilentFilePoseInputStream.hh>
#include <basic/options/option.hh>
#include <basic/database/open.hh>
#include <basic/options/option_macros.hh>
#include <protocols/viewer/viewers.hh>
#include <core/pose/Pose.hh>
#include <core/init/init.hh>
#include <core/io/pdb/pose_io.hh>
#include <utility/vector1.hh>
#include <ObjexxFCL/string.functions.hh>
#include <protocols/farna/RNA_DeNovoProtocol.hh>
#include <protocols/farna/RNA_StructureParameters.hh>
#include <protocols/farna/util.hh>
#include <iostream>
#include <string>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/chemical.OptionKeys.gen.hh>
#include <basic/options/keys/rna.OptionKeys.gen.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/sequence/Sequence.hh>
#include <utility/file/file_sys_util.hh>
#include <utility/excn/Exceptions.hh>

Functions
	OPT_KEY (IntegerVector, chunk_res) void rna_denovo_test()
void *	my_main (void *)
int	main (int argc, char *argv[])

Detailed Description

Author

Rhiju Das

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

References close_loops(), utility::io::oc::cout, basic::options::OptionKeys::constraints::cst_file, basic::options::OptionKeys::magnesium::montecarlo::cycles, basic::options::OptionKeys::rna::data_file, basic::options::OptionKeys::magnesium::montecarlo::dump, basic::init(), in::file::input_res(), utility::excn::EXCN_Base::msg(), my_main(), NEW_OPT, option, options, basic::options::OptionKeys::flexPepDocking::params_file, basic::options::OptionKeys::chemical::patch_selectors, basic::options::OptionKeys::abinitio::temperature, basic::options::OptionKeys::rna::vall_torsions, and basic::options::OptionKeys::rna::vary_geometry.

void* my_main

(

void *

)

References utility::options::OptionKeys::options::exit.

Referenced by main().

OPT_KEY	(	IntegerVector	,
		chunk_res
	)

References utility::io::oc::cerr, basic::options::OptionKeys::chemical::chemical, close_loops(), basic::options::OptionKeys::constraints::constraints, utility::io::oc::cout, basic::options::OptionKeys::constraints::cst_file, basic::options::OptionKeys::magnesium::montecarlo::cycles, basic::options::OptionKeys::motifs::data_file, basic::options::OptionKeys::magnesium::montecarlo::dump, basic::options::OptionKeys::in::file::extended_pose, in::file::fasta(), utility::file::file_exists(), basic::database::full_name(), app.surface_docking.surface_docking::input, in::file::input_res(), in::file::native(), test.Workshop7test::native_pose, local::nstruct, out::nstruct(), option, options, basic::options::OptionKeys::flexPepDocking::params_file, in::path::path(), app.surface_docking.surface_docking::pose, runtime_assert, in::file::s(), PyMOL_demo::scorefxn, basic::options::OptionKeys::frags::scoring::scoring, in::file::silent(), out::file::silent(), in::file::silent_struct_type(), basic::options::OptionKeys::abinitio::temperature, basic::options::OptionKeys::inout::dbms::user, basic::options::OptionKeys::rna::vall_torsions, and basic::options::OptionKeys::rna::vary_geometry.