contactMap.cc File Reference

simple application for creating a contact map from multiple models of the same protein. More...

#include <string>
#include <sstream>
#include <devel/init.hh>
#include <core/types.hh>
#include <basic/Tracer.hh>
#include <utility/tag/Tag.hh>
#include <utility/vector1.hh>
#include <core/chemical/ResidueTypeSet.fwd.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/ChemicalManager.hh>
#include <protocols/filters/Filter.hh>
#include <basic/datacache/DataMap.hh>
#include <protocols/contact_map/ContactMap.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <core/import_pose/pose_stream/util.hh>
#include <core/import_pose/pose_stream/MetaPoseInputStream.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/contactMap.OptionKeys.gen.hh>
#include <basic/options/option_macros.hh>

Typedefs
typedef protocols::contact_map::ContactMap	ContactMap

Functions
static thread_local basic::Tracer	tr ("contactMap")
utility::vector1< ContactMap >	processRegions (std::string region_def, core::pose::Pose const &pose)
int	main (int argc, char *argv[])

Detailed Description

simple application for creating a contact map from multiple models of the same protein.

Author

Joerg Schaarschmidt

Typedef Documentation

typedef protocols::contact_map::ContactMap ContactMap

Function Documentation

int main	(	int	argc,
		char *	argv[]
	)

References basic::options::OptionKeys::chemical::chemical, utility::io::oc::cout, in::path::database(), contactMap::distance_cutoff(), contactMap::distance_matrix(), in::file::extra_res(), in::file::extra_res_cen(), in::file::extra_res_fa(), basic::Tracer::Info, devel::init(), app.surface_docking.surface_docking::input, in::file::l(), utility::excn::EXCN_Base::msg(), OPT, basic::options::option, options, app.surface_docking.surface_docking::pose, contactMap::prefix(), processRegions(), contactMap::region_def(), in::file::residue_type_set(), contactMap::row_format(), in::file::s(), in::file::silent(), in::file::silent_struct_type(), in::file::tags(), and tr().

utility::vector1<ContactMap> processRegions	(	std::string	region_def,
		core::pose::Pose const &	pose
	)

References basic::options::OptionKeys::cm::cm, app.delta_score_per_mutation::data, basic::options::OptionKeys::contactMap::distance_cutoff, basic::options::OptionKeys::contactMap::distance_matrix, basic::options::OptionKeys::AnchoredDesign::filters::filters, basic::options::option, options, make_symmdef_file_denovo::pos, basic::options::OptionKeys::contactMap::prefix, basic::options::OptionKeys::contactMap::region_def, basic::options::OptionKeys::contactMap::row_format, and tag.

Referenced by main().

static thread_local basic::Tracer tr ( "contactMap"  )

static

Referenced by create_theozyme_pdb(), main(), numeric::linear_algebra::qzval(), numeric::linear_algebra::qzvec(), and basic::Tracer::set_ios_hook().