constraints Namespace Reference

Functions
BooleanOptionKey const	constraints ("constraints")
BooleanOptionKey const	exit_on_bad_read ("constraints:exit_on_bad_read")
StringVectorOptionKey const	cst_file ("constraints:cst_file")
RealOptionKey const	cst_weight ("constraints:cst_weight")
RealOptionKey const	max_cst_dist ("constraints:max_cst_dist")
StringVectorOptionKey const	cst_fa_file ("constraints:cst_fa_file")
RealOptionKey const	cst_fa_weight ("constraints:cst_fa_weight")
BooleanOptionKey const	normalize_mixture_func ("constraints:normalize_mixture_func")
BooleanOptionKey const	penalize_mixture_func ("constraints:penalize_mixture_func")
FileOptionKey const	forest_file ("constraints:forest_file")
BooleanOptionKey const	compute_total_dist_cst ("constraints:compute_total_dist_cst")
IntegerOptionKey const	cull_with_native ("constraints:cull_with_native")
FileOptionKey const	dump_cst_set ("constraints:dump_cst_set")
IntegerVectorOptionKey const	evaluate_max_seq_sep ("constraints:evaluate_max_seq_sep")
BooleanOptionKey const	named ("constraints:named")
BooleanOptionKey const	no_cst_in_relax ("constraints:no_cst_in_relax")
BooleanOptionKey const	no_linearize_bounded ("constraints:no_linearize_bounded")
RealOptionKey const	pocket_constraint_weight ("constraints:pocket_constraint_weight")
BooleanOptionKey const	pocket_zero_derivatives ("constraints:pocket_zero_derivatives")
BooleanOptionKey const	viol ("constraints:viol")
IntegerOptionKey const	viol_level ("constraints:viol_level")
StringOptionKey const	viol_type ("constraints:viol_type")
RealOptionKey const	sog_cst_param ("constraints:sog_cst_param")
RealOptionKey const	sog_upper_bound ("constraints:sog_upper_bound")
BooleanOptionKey const	epr_distance ("constraints:epr_distance")
IntegerOptionKey const	combine ("constraints:combine")
FileOptionKey const	combine_exclude_region ("constraints:combine_exclude_region")
BooleanOptionKey const	skip_redundant ("constraints:skip_redundant")
IntegerOptionKey const	skip_redundant_width ("constraints:skip_redundant_width")

Function Documentation

IntegerOptionKey const constraints::combine

(

"constraints:combine"

)

FileOptionKey const constraints::combine_exclude_region

(

"constraints:combine_exclude_region"

)

BooleanOptionKey const constraints::compute_total_dist_cst

(

"constraints:compute_total_dist_cst"

)

BooleanOptionKey const constraints::constraints

(

"constraints"

)

StringVectorOptionKey const constraints::cst_fa_file

(

"constraints:cst_fa_file"

)

Referenced by main().

RealOptionKey const constraints::cst_fa_weight

(

"constraints:cst_fa_weight"

)

Referenced by main().

StringVectorOptionKey const constraints::cst_file

(

"constraints:cst_file"

)

Referenced by main(), and register_options().

RealOptionKey const constraints::cst_weight

(

"constraints:cst_weight"

)

IntegerOptionKey const constraints::cull_with_native

(

"constraints:cull_with_native"

)

FileOptionKey const constraints::dump_cst_set

(

"constraints:dump_cst_set"

)

BooleanOptionKey const constraints::epr_distance

(

"constraints:epr_distance"

)

IntegerVectorOptionKey const constraints::evaluate_max_seq_sep

(

"constraints:evaluate_max_seq_sep"

)

BooleanOptionKey const constraints::exit_on_bad_read

(

"constraints:exit_on_bad_read"

)

FileOptionKey const constraints::forest_file

(

"constraints:forest_file"

)

RealOptionKey const constraints::max_cst_dist

(

"constraints:max_cst_dist"

)

BooleanOptionKey const constraints::named

(

"constraints:named"

)

BooleanOptionKey const constraints::no_cst_in_relax

(

"constraints:no_cst_in_relax"

)

BooleanOptionKey const constraints::no_linearize_bounded

(

"constraints:no_linearize_bounded"

)

BooleanOptionKey const constraints::normalize_mixture_func

(

"constraints:normalize_mixture_func"

)

BooleanOptionKey const constraints::penalize_mixture_func

(

"constraints:penalize_mixture_func"

)

RealOptionKey const constraints::pocket_constraint_weight

(

"constraints:pocket_constraint_weight"

)

BooleanOptionKey const constraints::pocket_zero_derivatives

(

"constraints:pocket_zero_derivatives"

)

BooleanOptionKey const constraints::skip_redundant

(

"constraints:skip_redundant"

)

IntegerOptionKey const constraints::skip_redundant_width

(

"constraints:skip_redundant_width"

)

RealOptionKey const constraints::sog_cst_param

(

"constraints:sog_cst_param"

)

RealOptionKey const constraints::sog_upper_bound

(

"constraints:sog_upper_bound"

)

BooleanOptionKey const constraints::viol

(

"constraints:viol"

)

IntegerOptionKey const constraints::viol_level

(

"constraints:viol_level"

)

StringOptionKey const constraints::viol_type

(

"constraints:viol_type"

)