toolbox.rcsb Namespace Reference

Functions
def	load_from_rcsb
def	pose_from_rcsb
def	load_fasta_from_rcsb

Function Documentation

def toolbox.rcsb.load_fasta_from_rcsb	(		pdb_code,
			fasta_outfile
	)

References basic::database.open().

def toolbox.rcsb.load_from_rcsb	(		pdb_code,
			pdb_outfile = ''
	)

Writes PDB data for RCSB data for  <pdb_code>  into the file  <pdb_code>.pdb

example:
    load_from_rcsb('1YY8')
See also:
    Pose
    pose_from_pdb
    pose_from_rcsb
    pose_from_sequence
    cleanATOM
    cleanCRYS

References basic::database.open().

Referenced by toolbox.rcsb.pose_from_rcsb().

def toolbox.rcsb.pose_from_rcsb	(		pdb_code,
			ATOM = True,
			CRYS = False,
			pdb_outfile = ''
	)

Returns a pose for RCSB PDB  <pdb_code> , also writes this data to
<pdb_code>.pdb, optionally calls cleanATOM and cleanCYRS

example:
    pose=pose_from_rcsb('1YY8')
See also:
    Pose
    pose_from_pdb
    pose_from_sequence
    load_from_rcsb
    cleanATOM
    cleanCRYS

References toolbox.cleanATOM(), toolbox.cleanCRYS(), and toolbox.rcsb.load_from_rcsb().