Here is a list of all class members with links to the classes they belong to:

- d -

• d : W128_T
• d2s() : utility::subset_mapping
• d_ : ObjexxFCL::format::Bite< T >
• data : app.pyrosetta_toolkit.modules.DesignBreakdown.SequenceResults , basic::datacache::DataCache< Data > , basic::datacache::DiagnosticData , Cache::head_t , numeric::kdtree::KDNode , numeric::kdtree::KDPoint , ObjexxFCL::Fstring , utility::list_element< T > , utility::OrderedTuple< T >
• data_ : basic::database::insert_statement_generator::RowData< T > , basic::datacache::DataCache< Data > , basic::datacache::DiagnosticData , basic::MetricValue< T > , numeric::geometry::hashing::SixDOffsetTree , numeric::kdtree::KDPoint , numeric::MathMatrix< T > , numeric::MathNTensor< T > , numeric::MathTensor< T > , numeric::MathVector< T > , utility::list_element< T > , utility::OrderedTuple< T >
• data_column : app.pyrosetta_toolkit.window_modules.insert_bfactor.InsertBFactor.InsertBFactor
• data_creator_map_ : basic::datacache::WriteableCacheableDataFactory
• data_entry : app.pyrosetta_toolkit.window_modules.insert_bfactor.InsertBFactor.InsertBFactor
• data_label : app.pyrosetta_toolkit.window_modules.insert_bfactor.InsertBFactor.InsertBFactor
• data_map_ : basic::datacache::DataMap , basic::datacache::HierarchicalDataMap
• DataAP : basic::datacache::DataCache< Data >
• database : app.pyrosetta_toolkit.window_modules.options_system.OptionSystemManager.OptionSystemManager
• database_session() : basic::database::DatabaseSessionOptions
• database_session_ : basic::database::DatabaseSessionOptions
• database_session_resource_tag_ : basic::resource_manager::locator::DatabaseResourceLocator
• DatabaseIOBenchmark() : DatabaseIOBenchmark
• DatabaseResourceLocator() : basic::resource_manager::locator::DatabaseResourceLocator
• DatabaseResourceLocatorCreator() : basic::resource_manager::locator::DatabaseResourceLocatorCreator
• DatabaseSessionManager() : utility::sql_database::DatabaseSessionManager
• DatabaseSessionOptions() : basic::database::DatabaseSessionOptions
• DatabaseSessionOptionsCreator() : basic::database::DatabaseSessionOptionsCreator
• DataCache() : basic::datacache::DataCache< Data >
• DataCAP : basic::datacache::DataCache< Data >
• DataCOP : basic::datacache::DataCache< Data >
• DataMap() : basic::datacache::DataMap , basic::datacache::WriteableCacheableMap
• dataMembers : tools.CppParser.CppClass
• DataOP : basic::datacache::DataCache< Data >
• DataOPs : basic::datacache::DataCache< Data >
• datatype() : basic::datacache::WriteableCacheableData
• db : app.pyrosetta_toolkit.modules.SQLPDB.PDB_database , app.pyrosetta_toolkit.modules.SQLPDB.SQLPDB
• db_mode_ : utility::sql_database::session
• db_name_ : utility::sql_database::session
• db_partition_ : utility::sql_database::session
• db_path : app.pyrosetta_toolkit.modules.DesignBreakdown.DesignBreakdown
• db_session_ : DatabaseIOBenchmark
• db_util : app.pyrosetta_toolkit.modules.SQLPDB.SQLPDB
• DbBigInt() : basic::database::schema_generator::DbBigInt
• DbDataType() : basic::database::schema_generator::DbDataType
• DbDouble() : basic::database::schema_generator::DbDouble
• DbInteger() : basic::database::schema_generator::DbInteger
• DbMoverMessageListener() : basic::message_listening::DbMoverMessageListener
• DbReal() : basic::database::schema_generator::DbReal
• DbText() : basic::database::schema_generator::DbText
• DbTextKey() : basic::database::schema_generator::DbTextKey
• DbUUID() : basic::database::schema_generator::DbUUID
• dctPlan : numeric::fourier::SHT
• ddy() : numeric::interpolation::spline::SimpleInterpolator
• ddy_ : numeric::interpolation::spline::SimpleInterpolator
• deactivate() : utility::Bound< typename > , utility::options::Option , utility::options::ScalarOption , utility::options::ScalarOption_T_< K, T > , utility::options::VariantOption< O > , utility::options::VectorOption , utility::options::VectorOption_T_< K, T >
• deallocate() : utility::signals::SignalHub< ResultType, Signal >
• debug : app.pyrosetta_toolkit.window_modules.interactive_terminal.interactive_terminal.TkConsoleView
• Debug : basic::Tracer
• debug_pdb() : numeric::geometry::hashing::xyzStripeHash
• decoy_entry : app.pyrosetta_toolkit.window_main.frames.QuickProtocolsFrame.QuickProtocolsFrame
• decoy_label : app.pyrosetta_toolkit.window_main.frames.QuickProtocolsFrame.QuickProtocolsFrame
• decoys : app.pyrosetta_toolkit.window_main.IO.GUIOutput.GUIOutput
• decrease_coval() : utility::heap
• decrement_indentation() : numeric::expression_parser::ASTPrinter
• deep_construct : yaml.constructor.BaseConstructor
• def() : utility::options::FileOption , utility::options::FileVectorOption , utility::options::PathOption , utility::options::PathVectorOption , utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• default : options_class.Option
• DEFAULT : utility::options::Option
• default_active() : utility::options::Option , utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• default_buffer_size : boost_adaptbx::python::streambuf
• default_CCD() : app.pyrosetta_toolkit.modules.protocols.HighResLoopModelingProtocols.HighResLoopModelingProtocols , app.pyrosetta_toolkit.modules.protocols.LowResLoopModelingProtocols.LowResLoopModelingProtocols
• default_flow_style : yaml.representer.BaseRepresenter
• default_generalEvent() : Wrapper_PosePyObserver
• default_inactive() : utility::options::Option , utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• default_inactive_error() : utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• default_is_legal() : utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• default_KIC() : app.pyrosetta_toolkit.modules.protocols.HighResLoopModelingProtocols.HighResLoopModelingProtocols , app.pyrosetta_toolkit.modules.protocols.LowResLoopModelingProtocols.LowResLoopModelingProtocols
• DEFAULT_MAPPING_TAG : yaml.resolver.BaseResolver
• default_obeys_bounds() : utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• default_options() : basic::database::DatabaseSessionLoader , basic::resource_manager::ResourceLoader
• DEFAULT_SCALAR_TAG : yaml.resolver.BaseResolver
• DEFAULT_SEQUENCE_TAG : yaml.resolver.BaseResolver
• default_size() : utility::options::Option , utility::options::ScalarOption_T_< K, T > , utility::options::VariantOption< O > , utility::options::VectorOption_T_< K, T >
• default_size_ok() : utility::options::VectorOption_T_< K, T >
• default_state_ : utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• default_string() : utility::options::BooleanOption , utility::options::Option , utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• default_style : yaml.representer.BaseRepresenter
• DEFAULT_TAG_PREFIXES : yaml.emitter.Emitter
• DEFAULT_TAGS : yaml.parser.Parser
• default_to() : utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• default_value() : utility::options::FileOption , utility::options::FileVectorOption , utility::options::PathOption , utility::options::PathVectorOption , utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• default_value_ : utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• defaultDic : app.pyrosetta_toolkit.window_modules.scorefunction.ScoreFxnControl.ScoreFxnControl
• defaultdir : app.pyrosetta_toolkit.window_modules.clean_pdb.FixPDBWindow.FixPDBWindow
• defer_ : basic::database::schema_generator::ForeignKey
• defines_intrares_energy() : test.T870_SubClassing_EnergyMethods2.CD2B_Method , test.T870_SubClassing_EnergyMethods2.CI2B_Method , test.Workshop9_my_shapes.CI2BScoreMethod
• definition() : utility::json_spirit::Json_grammer< Value_type, Iter_type >::definition< ScannerT >
• deg2rad() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• degree : Kernel , numeric::Polynomial_1d , svm_parameter
• degree_ : numeric::Polynomial_1d
• degrees_to_radians() : numeric::NumericTraits< T > , numeric::NumericTraits< double > , numeric::NumericTraits< float > , numeric::NumericTraits< long double >
• del_row() : app.pyrosetta_toolkit.modules.prettytable.prettytable.PrettyTable
• delAccessory() : app.pyrosetta_toolkit.window_modules.protocol_builder.ProtocolBuilder.MainProtocols
• delete_contents_at_nread_limit() : utility::io::FileContentsMap
• delete_contents_at_nread_limit_ : utility::io::FileContentsMap
• delete_file_contents() : utility::io::FileContentsMap
• delim_label : app.pyrosetta_toolkit.window_modules.insert_bfactor.InsertBFactor.InsertBFactor
• delim_type : app.pyrosetta_toolkit.window_modules.insert_bfactor.InsertBFactor.InsertBFactor
• delta : basic::sampling::orientations::QuatDBMetadata , basic::sampling::orientations::QuaternionGrid
• delta_ : numeric::interpolation::spline::BicubicSpline , numeric::interpolation::spline::CubicSpline , numeric::interpolation::spline::PolycubicSpline , numeric::interpolation::spline::TricubicSpline
• demangled : tools.CppParser.CppFunction
• DemoBase() : DemoBase
• DemoDerived() : DemoDerived
• dens_score_ : CAtrace
• dens_wt_ : FragmentAssemblyMover
• densities() : numeric::interpolation::Histogram< typename, typename >
• densities_ : numeric::interpolation::Histogram< typename, typename >
• depth() : basic::Emitter
• DereferenceIterator() : utility::DereferenceIterator< Container >
• derivative() : numeric::interpolation::Histogram< typename, typename >
• Derivative() : numeric::interpolation::spline::CubicSpline
• derivative_linear() : numeric::interpolation::Histogram< typename, typename >
• desc : options_class.Option
• descend_resolver() : yaml.resolver.BaseResolver
• description() : utility::options::Option , utility::options::ScalarOption_T_< K, T > , utility::options::VariantOption< O > , utility::options::VectorOption_T_< K, T >
• description_ : utility::options::ScalarOption_T_< K, T > , utility::options::VectorOption_T_< K, T >
• deserialize() : numeric::interpolation::spline::CompoundInterpolator , numeric::interpolation::spline::Interpolator , numeric::interpolation::spline::SimpleInterpolator
• deserialize_data() : basic::message_listening::DbMoverMessageListener
• design : toolbox.generate_resfile.ResfileWriter
• design_accessible_sa : app.pyrosetta_toolkit.window_modules.design.ResfileDesignWindow.ResfileDesignWindow
• design_pose : DesignBenchmark
• design_relative_mutability : app.pyrosetta_toolkit.window_modules.design.ResfileDesignWindow.ResfileDesignWindow
• design_residue() : app.pyrosetta_toolkit.modules.protocols.DesignProtocols.DesignProtocols
• design_supercharge() : supercharge
• design_supercharge_AvNAPSA() : supercharge
• design_surface_probability : app.pyrosetta_toolkit.window_modules.design.ResfileDesignWindow.ResfileDesignWindow
• design_symmetric_homodimer_interface() : zinc1_homodimer_design
• design_symmetric_homodimer_metal_interface() : zinc2_homodimer_design
• DesignBenchmark() : DesignBenchmark
• DesignDic : app.pyrosetta_toolkit.pyrosetta_toolkit.main_window , app.pyrosetta_toolkit.window_modules.design.ResfileDesignWindow.ResfileDesignWindow
• desRes() : app.pyrosetta_toolkit.window_modules.full_control.FullControlWindow.FullControlWindow
• dest : BuildBindings.ModuleBuilder , BuildPackagedBindings.ModuleBuilder
• dest_origin_rpath : BuildPackagedBindings.ModuleBuilder
• destination_size() : utility::subset_mapping
• destroy_char_buffer() : utility::io::ozstream
• destructed() : ObjexxFCL::Dimension , ObjexxFCL::DimensionExpression , ObjexxFCL::DimensionExpressionCon , ObjexxFCL::DimensionExpressionCube , ObjexxFCL::DimensionExpressionDiv , ObjexxFCL::DimensionExpressionMax , ObjexxFCL::DimensionExpressionMin , ObjexxFCL::DimensionExpressionMul , ObjexxFCL::DimensionExpressionPow , ObjexxFCL::DimensionExpressionRef , ObjexxFCL::DimensionExpressionSquare , ObjexxFCL::DimensionExpressionSub , ObjexxFCL::DimensionExpressionSum , ObjexxFCL::DynamicIndexRange , ObjexxFCL::FArray1D< typename > , ObjexxFCL::FArray1P< typename > , ObjexxFCL::FArray2D< typename > , ObjexxFCL::FArray2P< typename > , ObjexxFCL::FArray3D< typename > , ObjexxFCL::FArray3P< typename > , ObjexxFCL::FArray4D< typename > , ObjexxFCL::FArray4P< typename > , ObjexxFCL::FArray5D< typename > , ObjexxFCL::FArray5P< typename > , ObjexxFCL::FArray6D< typename > , ObjexxFCL::FArray6P< typename > , ObjexxFCL::KeyFArray1D< typename > , ObjexxFCL::KeyFArray2D< typename > , ObjexxFCL::KeyFArray3D< typename > , ObjexxFCL::KeyFArray4D< typename > , ObjexxFCL::KeyFArray5D< typename > , ObjexxFCL::KeyFArray6D< typename > , ObjexxFCL::Observer
• destructor : tools.CppParser.CppClass
• det() : numeric::xyzMatrix< typename >
• detach() : ObjexxFCL::CArrayP< typename > , ObjexxFCL::FArray1A< typename > , ObjexxFCL::FArray1P< typename > , ObjexxFCL::FArray2A< typename > , ObjexxFCL::FArray2P< typename > , ObjexxFCL::FArray3A< typename > , ObjexxFCL::FArray3P< typename > , ObjexxFCL::FArray4A< typename > , ObjexxFCL::FArray4P< typename > , ObjexxFCL::FArray5A< typename > , ObjexxFCL::FArray5P< typename > , ObjexxFCL::FArray6A< typename > , ObjexxFCL::FArray6P< typename > , ObjexxFCL::FArray< typename >
• determine_encoding() : yaml.reader.Reader
• dF() : numeric::interpolation::spline::CubicSpline
• dFdall() : numeric::interpolation::spline::PolycubicSpline
• dFdx() : numeric::interpolation::spline::BicubicSpline , numeric::interpolation::spline::TricubicSpline
• dFdxi() : numeric::interpolation::spline::PolycubicSpline
• dFdy() : numeric::interpolation::spline::BicubicSpline , numeric::interpolation::spline::TricubicSpline
• dFdz() : numeric::interpolation::spline::TricubicSpline
• diag() : numeric::xyzMatrix< typename > , ObjexxFCL::FArray2D< typename > , ObjexxFCL::KeyFArray2D< typename >
• DiagnosticData() : basic::datacache::DiagnosticData
• DicProtocol : app.pyrosetta_toolkit.window_modules.protocol_builder.ProtocolBuilder.MainProtocols
• die_for_unaccessed_options() : utility::tag::Tag
• die_for_unaccessed_options_recursively() : utility::tag::Tag
• Difference : ObjexxFCL::CArray< typename > , ObjexxFCL::CArrayP< typename > , ObjexxFCL::ChunkVector< typename > , ObjexxFCL::FArray1< typename > , ObjexxFCL::FArray1A< typename > , ObjexxFCL::FArray1D< typename > , ObjexxFCL::FArray1P< typename > , ObjexxFCL::FArray2< typename > , ObjexxFCL::FArray2A< typename > , ObjexxFCL::FArray2D< typename > , ObjexxFCL::FArray2P< typename > , ObjexxFCL::FArray3< typename > , ObjexxFCL::FArray3A< typename > , ObjexxFCL::FArray3D< typename > , ObjexxFCL::FArray3P< typename > , ObjexxFCL::FArray4< typename > , ObjexxFCL::FArray4A< typename > , ObjexxFCL::FArray4D< typename > , ObjexxFCL::FArray4P< typename > , ObjexxFCL::FArray5< typename > , ObjexxFCL::FArray5A< typename > , ObjexxFCL::FArray5D< typename > , ObjexxFCL::FArray5P< typename > , ObjexxFCL::FArray6< typename > , ObjexxFCL::FArray6A< typename > , ObjexxFCL::FArray6D< typename > , ObjexxFCL::FArray6P< typename > , ObjexxFCL::FArray< typename > , ObjexxFCL::FArraySection< typename > , ObjexxFCL::KeyFArray1D< typename > , ObjexxFCL::KeyFArray2D< typename > , ObjexxFCL::KeyFArray3D< typename > , ObjexxFCL::KeyFArray4D< typename > , ObjexxFCL::KeyFArray5D< typename > , ObjexxFCL::KeyFArray6D< typename > , utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyMapTraits< K, T > , utility::keys::KeySetTraits< K > , utility::keys::KeyVector< K, T > , utility::keys::KeyVectorTraits< K > , utility::keys::SmallKeyMap< K, T > , utility::keys::SmallKeyVector< K, T > , utility::vector0< T, A > , utility::vector0< bool, A > , utility::vector1< T, A > , utility::vector1< bool, A > , utility::vectorL< SSize, T, A > , utility::vectorL< L, bool, A >
• difference_type : numeric::sphericalVector< typename > , numeric::xyzTriple< typename > , numeric::xyzVector< typename > , ObjexxFCL::CArray< typename > , ObjexxFCL::CArrayP< typename > , ObjexxFCL::ChunkVector< typename > , ObjexxFCL::FArray1< typename > , ObjexxFCL::FArray1A< typename > , ObjexxFCL::FArray1D< typename > , ObjexxFCL::FArray1P< typename > , ObjexxFCL::FArray2< typename > , ObjexxFCL::FArray2A< typename > , ObjexxFCL::FArray2D< typename > , ObjexxFCL::FArray2P< typename > , ObjexxFCL::FArray3< typename > , ObjexxFCL::FArray3A< typename > , ObjexxFCL::FArray3D< typename > , ObjexxFCL::FArray3P< typename > , ObjexxFCL::FArray4< typename > , ObjexxFCL::FArray4A< typename > , ObjexxFCL::FArray4D< typename > , ObjexxFCL::FArray4P< typename > , ObjexxFCL::FArray5< typename > , ObjexxFCL::FArray5A< typename > , ObjexxFCL::FArray5D< typename > , ObjexxFCL::FArray5P< typename > , ObjexxFCL::FArray6< typename > , ObjexxFCL::FArray6A< typename > , ObjexxFCL::FArray6D< typename > , ObjexxFCL::FArray6P< typename > , ObjexxFCL::FArray< typename > , ObjexxFCL::FArraySection< typename > , ObjexxFCL::KeyFArray1D< typename > , ObjexxFCL::KeyFArray2D< typename > , ObjexxFCL::KeyFArray3D< typename > , ObjexxFCL::KeyFArray4D< typename > , ObjexxFCL::KeyFArray5D< typename > , ObjexxFCL::KeyFArray6D< typename > , utility::DereferenceIterator< Container > , utility::fixedsizearray1const_iterator< T, S > , utility::fixedsizearray1iterator< T, S > , utility::keys::ClassKeyMap< K, T, C > , utility::keys::ClassKeyVector< K, T, C > , utility::keys::KeyMapTraits< K, T > , utility::keys::KeySetTraits< K > , utility::keys::KeyVector< K, T > , utility::keys::KeyVectorTraits< K > , utility::keys::SmallKeyMap< K, T > , utility::keys::SmallKeyVector< K, T > , utility::vector0< T, A > , utility::vector0< bool, A > , utility::vector1< T, A > , utility::vector1< bool, A > , utility::vectorL< SSize, T, A > , utility::vectorL< L, bool, A >
• differentiate() : numeric::expression_parser::AbsoluteValueExpression , numeric::expression_parser::AddExpression , numeric::expression_parser::AndExpression , numeric::expression_parser::DivideExpression , numeric::expression_parser::EqualsExpression , numeric::expression_parser::Expression , numeric::expression_parser::GT_Expression , numeric::expression_parser::GTE_Expression , numeric::expression_parser::ITEExpression , numeric::expression_parser::LiteralExpression , numeric::expression_parser::LT_Expression , numeric::expression_parser::LTE_Expression , numeric::expression_parser::MaxExpression , numeric::expression_parser::MetaMaxExpression , numeric::expression_parser::MetaMinExpression , numeric::expression_parser::MinExpression , numeric::expression_parser::MultiplyExpression , numeric::expression_parser::NotExpression , numeric::expression_parser::OrExpression , numeric::expression_parser::SquarerootExpression , numeric::expression_parser::SubtractExpression , numeric::expression_parser::VariableExpression
• dihed_scorefxn_ : zinc1_homodimer_design
• dim() : ObjexxFCL::FArray1A< typename > , ObjexxFCL::FArray1P< typename > , ObjexxFCL::FArray2A< typename > , ObjexxFCL::FArray2P< typename > , ObjexxFCL::FArray3A< typename > , ObjexxFCL::FArray3P< typename > , ObjexxFCL::FArray4A< typename > , ObjexxFCL::FArray4P< typename > , ObjexxFCL::FArray5A< typename > , ObjexxFCL::FArray5P< typename > , ObjexxFCL::FArray6A< typename > , ObjexxFCL::FArray6P< typename >
• dim_labels() : numeric::MultiDimensionalHistogram
• dim_labels_ : numeric::MultiDimensionalHistogram
• dim_p_ : ObjexxFCL::DimensionExpressionRef
• dim_sizes_ : utility::FixedSizeLexicographicalIterator< S > , utility::LexicographicalIterator
• Dimension() : ObjexxFCL::Dimension
• dimension() : ObjexxFCL::FArray1A< typename > , ObjexxFCL::FArray1D< typename > , ObjexxFCL::FArray1P< typename > , ObjexxFCL::FArray2A< typename > , ObjexxFCL::FArray2D< typename > , ObjexxFCL::FArray2P< typename > , ObjexxFCL::FArray3A< typename > , ObjexxFCL::FArray3D< typename > , ObjexxFCL::FArray3P< typename > , ObjexxFCL::FArray4A< typename > , ObjexxFCL::FArray4D< typename > , ObjexxFCL::FArray4P< typename > , ObjexxFCL::FArray5A< typename > , ObjexxFCL::FArray5D< typename > , ObjexxFCL::FArray5P< typename > , ObjexxFCL::FArray6A< typename > , ObjexxFCL::FArray6D< typename > , ObjexxFCL::FArray6P< typename > , ObjexxFCL::KeyFArray1D< typename > , ObjexxFCL::KeyFArray2D< typename > , ObjexxFCL::KeyFArray3D< typename > , ObjexxFCL::KeyFArray4D< typename > , ObjexxFCL::KeyFArray5D< typename > , ObjexxFCL::KeyFArray6D< typename >
• dimension_argument() : ObjexxFCL::FArray1A< typename > , ObjexxFCL::FArray2A< typename > , ObjexxFCL::FArray3A< typename > , ObjexxFCL::FArray4A< typename > , ObjexxFCL::FArray5A< typename > , ObjexxFCL::FArray6A< typename >
• dimension_assign() : ObjexxFCL::FArray1< typename > , ObjexxFCL::FArray1A< typename > , ObjexxFCL::FArray1D< typename > , ObjexxFCL::FArray1P< typename > , ObjexxFCL::FArray2< typename > , ObjexxFCL::FArray2A< typename > , ObjexxFCL::FArray2D< typename > , ObjexxFCL::FArray2P< typename > , ObjexxFCL::FArray3< typename > , ObjexxFCL::FArray3A< typename > , ObjexxFCL::FArray3D< typename > , ObjexxFCL::FArray3P< typename > , ObjexxFCL::FArray4< typename > , ObjexxFCL::FArray4A< typename > , ObjexxFCL::FArray4D< typename > , ObjexxFCL::FArray4P< typename > , ObjexxFCL::FArray5< typename > , ObjexxFCL::FArray5A< typename > , ObjexxFCL::FArray5D< typename > , ObjexxFCL::FArray5P< typename > , ObjexxFCL::FArray6< typename > , ObjexxFCL::FArray6A< typename > , ObjexxFCL::FArray6D< typename > , ObjexxFCL::FArray6P< typename > , ObjexxFCL::KeyFArray1D< typename > , ObjexxFCL::KeyFArray2D< typename > , ObjexxFCL::KeyFArray3D< typename > , ObjexxFCL::KeyFArray4D< typename > , ObjexxFCL::KeyFArray5D< typename > , ObjexxFCL::KeyFArray6D< typename >
• dimension_proxy() : ObjexxFCL::FArray1P< typename > , ObjexxFCL::FArray2P< typename > , ObjexxFCL::FArray3P< typename > , ObjexxFCL::FArray4P< typename > , ObjexxFCL::FArray5P< typename > , ObjexxFCL::FArray6P< typename >
• dimension_real() : ObjexxFCL::FArray1D< typename > , ObjexxFCL::FArray2D< typename > , ObjexxFCL::FArray3D< typename > , ObjexxFCL::FArray4D< typename > , ObjexxFCL::FArray5D< typename > , ObjexxFCL::FArray6D< typename > , ObjexxFCL::KeyFArray1D< typename > , ObjexxFCL::KeyFArray2D< typename > , ObjexxFCL::KeyFArray3D< typename > , ObjexxFCL::KeyFArray4D< typename > , ObjexxFCL::KeyFArray5D< typename > , ObjexxFCL::KeyFArray6D< typename >
• DimensionExpression() : ObjexxFCL::DimensionExpression
• DimensionExpressionCon() : ObjexxFCL::DimensionExpressionCon
• DimensionExpressionCube() : ObjexxFCL::DimensionExpressionCube
• DimensionExpressionDiv() : ObjexxFCL::DimensionExpressionDiv
• DimensionExpressionMax() : ObjexxFCL::DimensionExpressionMax
• DimensionExpressionMin() : ObjexxFCL::DimensionExpressionMin
• DimensionExpressionMul() : ObjexxFCL::DimensionExpressionMul
• DimensionExpressionPow() : ObjexxFCL::DimensionExpressionPow
• DimensionExpressionRef() : ObjexxFCL::DimensionExpressionRef
• DimensionExpressionSquare() : ObjexxFCL::DimensionExpressionSquare
• DimensionExpressionSub() : ObjexxFCL::DimensionExpressionSub
• DimensionExpressionSum() : ObjexxFCL::DimensionExpressionSum
• dimensions_initialized() : ObjexxFCL::FArray1A< typename > , ObjexxFCL::FArray1D< typename > , ObjexxFCL::FArray1P< typename > , ObjexxFCL::FArray2A< typename > , ObjexxFCL::FArray2D< typename > , ObjexxFCL::FArray2P< typename > , ObjexxFCL::FArray3A< typename > , ObjexxFCL::FArray3D< typename > , ObjexxFCL::FArray3P< typename > , ObjexxFCL::FArray4A< typename > , ObjexxFCL::FArray4D< typename > , ObjexxFCL::FArray4P< typename > , ObjexxFCL::FArray5A< typename > , ObjexxFCL::FArray5D< typename > , ObjexxFCL::FArray5P< typename > , ObjexxFCL::FArray6A< typename > , ObjexxFCL::FArray6D< typename > , ObjexxFCL::FArray6P< typename > , ObjexxFCL::FArray< typename > , ObjexxFCL::KeyFArray1D< typename > , ObjexxFCL::KeyFArray2D< typename > , ObjexxFCL::KeyFArray3D< typename > , ObjexxFCL::KeyFArray4D< typename > , ObjexxFCL::KeyFArray5D< typename > , ObjexxFCL::KeyFArray6D< typename >
• dimOther() : numeric::fourier::kiss_fftndr_state
• dimOther_ : numeric::fourier::kiss_fftndr_state
• dimprod() : numeric::fourier::kiss_fftnd_state
• dimprod_ : numeric::fourier::kiss_fftnd_state
• dimprods_ : numeric::geometry::hashing::SixDCoordinateBinner
• dimReal() : numeric::fourier::kiss_fftndr_state
• dimReal_ : numeric::fourier::kiss_fftndr_state
• dims() : numeric::fourier::kiss_fftnd_state
• dims_ : numeric::fourier::kiss_fftnd_state
• dims_v() : numeric::fourier::kiss_fftnd_state
• dimsize() : utility::FixedSizeLexicographicalIterator< S > , utility::LexicographicalIterator
• dimsizes() : numeric::geometry::hashing::SixDCoordinateBinner
• dimsizes_ : numeric::geometry::hashing::SixDCoordinateBinner
• disallow_res_ : HDdesignMover
• disconnect() : utility::signals::SignalHub< ResultType, Signal > , utility::signals::TokenHub< ResultType, Signal >
• disconnect_tokenize() : utility::signals::TokenHub< ResultType, Signal >
• discover_vertex() : utility::graph::HideVertexVisitor< Graph > , utility::graph::null_bfs_prune_visitor
• distance() : numeric::ClusteringTreeNode , numeric::kdtree::KDNode , numeric::kdtree::KDPoint , numeric::xyzTransform< typename > , numeric::xyzTriple< typename > , numeric::xyzVector< typename > , ObjexxFCL::CArray< typename > , ObjexxFCL::CArrayP< typename > , ObjexxFCL::ChunkVector< typename > , ObjexxFCL::FArray1< typename > , utility::fixedsizearray1const_iterator< T, S > , utility::fixedsizearray1iterator< T, S >
• distance_ : numeric::ClusteringTreeNode , numeric::kdtree::KDPoint
• distance_cutoff() : numeric::kdtree::KDPointList
• distance_cutoff_ : numeric::kdtree::KDPointList
• distance_squared() : numeric::xyzTransform< typename > , numeric::xyzTriple< typename > , numeric::xyzVector< typename > , ObjexxFCL::CArray< typename > , ObjexxFCL::CArrayP< typename > , ObjexxFCL::ChunkVector< typename > , ObjexxFCL::FArray1< typename >
• distances_ : utility::graph::RingSizeVisitor< Graph, DistanceMap, LabelMap >
• distribution() : numeric::random::DistributionSampler< T >
• distribution_ : numeric::random::DistributionSampler< T >
• DistributionSampler() : numeric::random::DistributionSampler< T >
• disulfide_mm_ : UBQ_GTPase_disulfide_Mover
• disulfide_terms : app.pyrosetta_toolkit.modules.RegionalScoring.RegionalScoring
• divide : numeric::sphericalVector< typename > , numeric::xyzTriple< typename > , numeric::xyzVector< typename >
• DivideExpression() : numeric::expression_parser::DivideExpression
• DNA_aliased : app.pyrosetta_toolkit.modules.PythonPDB.PythonPDB
• DNAchains : loadPDB.Protein
• do_has_observer() : ObjexxFCL::ObserverMulti
• do_indent() : basic::Emitter , basic::JsonEmitter , basic::YamlEmitter
• do_notify_destructed() : ObjexxFCL::ObserverMulti
• do_remove_observer() : ObjexxFCL::ObserverMulti
• do_shrinking() : Solver , Solver_NU
• docking : DockingBenchmark< dock, TScale >
• DockingBenchmark() : DockingBenchmark< dock, TScale >
• dockMCM : app.surface_docking.movers.FullAtomRelax
• dom : tools.CppParser.ClangXML , tools.CppParser.GccXML
• done : yaml.scanner.Scanner
• dot() : Kernel , numeric::Quaternion< typename > , numeric::xyzTriple< typename > , numeric::xyzVector< typename > , ObjexxFCL::CArray< typename > , ObjexxFCL::CArrayP< typename > , ObjexxFCL::ChunkVector< typename > , ObjexxFCL::FArray1< typename >
• dot_product() : numeric::Quaternion< typename > , numeric::xyzTriple< typename > , numeric::xyzVector< typename > , ObjexxFCL::CArray< typename > , ObjexxFCL::CArrayP< typename > , ObjexxFCL::ChunkVector< typename > , ObjexxFCL::FArray1< typename >
• double_msg() : utility::SimulateMPIMessage
• double_msg_ : utility::SimulateMPIMessage
• double_of() : ObjexxFCL::Fstring
• doubles_msg() : utility::SimulateMPIMessage
• doubles_msg_ : utility::SimulateMPIMessage
• DougsDockDesignMinimizeMagicMover() : DougsDockDesignMinimizeMagicMover
• dox_symbols : tools.dox_extract.dox_extract
• draw() : test.Workshop9_my_shapes.MyShape
• dry_run_ : basic::ComparingTracer
• dsecox_ : numeric::interpolation::spline::BicubicSpline , numeric::interpolation::spline::CubicSpline , numeric::interpolation::spline::TricubicSpline
• dsecoxy_ : numeric::interpolation::spline::BicubicSpline , numeric::interpolation::spline::TricubicSpline
• dsecoxyz_ : numeric::interpolation::spline::TricubicSpline
• dsecoxz_ : numeric::interpolation::spline::TricubicSpline
• dsecoy_ : numeric::interpolation::spline::BicubicSpline , numeric::interpolation::spline::TricubicSpline
• dsecoyz_ : numeric::interpolation::spline::TricubicSpline
• dsecoz_ : numeric::interpolation::spline::TricubicSpline
• dst() : utility::SimulateMPIMessage
• dst_ : utility::SimulateMPIMessage
• dst_2_src_ : utility::subset_mapping
• DummyMover() : DummyMover
• dy : numeric::interpolation::spline::Point
• dynamic_memory_usage() : utility::recent_history_queue
• DynamicIndexRange : ObjexxFCL::Dimension , ObjexxFCL::DynamicIndexRange , ObjexxFCL::IndexRange
• DynamicProfileThis() : basic::DynamicProfileThis