bridgeObjects.hh

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// -*- mode:c++;tab-width:2;indent-tabs-mode:t;show-trailing-whitespace:t;rm-trailing-spaces:t -*-
// vi: set ts=2 noet:
//
// (c) Copyright Rosetta Commons Member Institutions.
// (c) This file is part of the Rosetta software suite and is made available under license.
// (c) The Rosetta software is developed by the contributing members of the Rosetta Commons.
// (c) For more information, see http://www.rosettacommons.org. Questions about this can be
// (c) addressed to University of Washington UW TechTransfer, email: license@u.washington.edu.

/// @file   bridgeObjects.hh
/// @brief  Header file for bridgeObjects code for ALC
/// @author Evangelos A. Coutsias
/// @author Daniel J. Mandell

#ifndef INCLUDED_numeric_kinematic_closure_bridgeObjects_hh
#define INCLUDED_numeric_kinematic_closure_bridgeObjects_hh

// Rosetta Headers
#include <numeric/types.hh>

// Utility headers

#include <utility/vector1.fwd.hh>


namespace numeric {
namespace kinematic_closure {

void bridgeObjects (const utility::vector1<utility::vector1<numeric::Real> >& atoms,
  const utility::vector1<numeric::Real> & dt, const utility::vector1<numeric::Real> & da,
  const utility::vector1<numeric::Real> & db, const utility::vector1<int>& pivots,
  const utility::vector1<int>& order, utility::vector1<utility::vector1<numeric::Real> >& t_ang,
  utility::vector1<utility::vector1<numeric::Real> >& b_ang,
  utility::vector1<utility::vector1<numeric::Real> >& b_len, int& nsol);
void chainTORS (const int& n, const utility::vector1<utility::vector1<numeric::Real> >& atoms,
  utility::vector1<numeric::Real>& t_ang, utility::vector1<numeric::Real>& b_ang,
  utility::vector1<numeric::Real>& b_len, utility::vector1<numeric::Real>& R0,
  utility::vector1<utility::vector1<numeric::Real> >& Q);
numeric::Real torsion(const utility::vector1<numeric::Real>& a, const utility::vector1<numeric::Real>& b,
  const utility::vector1<numeric::Real>& c, const utility::vector1<numeric::Real>& d);
void chainXYZ  (const int& n,
  const utility::vector1<numeric::Real>& b_len,
  const utility::vector1<numeric::Real>& b_ang,
  const utility::vector1<numeric::Real>& t_ang,
  const bool space,
  const utility::vector1<numeric::Real>& R0,
  const utility::vector1<utility::vector1<numeric::Real> >& Q,
  utility::vector1<utility::vector1<numeric::Real> >& atoms
);

void chainXYZ  (
  const int& n,
  const utility::vector1<numeric::Real>& b_len,
  const utility::vector1<numeric::Real>& b_ang,
  const utility::vector1<numeric::Real>& t_ang,
  utility::vector1<utility::vector1<numeric::Real> >& atoms);

numeric::Real bondangle(const utility::vector1<numeric::Real>& a, const utility::vector1<numeric::Real>& b,
  const utility::vector1<numeric::Real>& c);

} // end namespace kinematic_closure
} // end namespace numeric

#endif