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Namespace List
Here is a list of all namespaces with brief descriptions:
[detail level
1
2
3
4
5
]
N
amino_acids
►
N
app
N
delta_score_per_mutation
►
N
pyrosetta_toolkit
►
N
modules
N
calibur
►
N
definitions
N
restype_definitions
N
DesignBreakdown
N
help
►
N
prettytable
N
prettytable
N
prettytable_test
N
setup
►
N
protocols
N
AnalysisProtocols
N
DesignProtocols
N
DockingProtocols
N
FloppyTailProtocol
N
GraftingProtocols
N
HighResLoopModelingProtocols
N
LowResLoopModelingProtocols
N
MinimizationProtocols
N
ProtocolBaseClass
N
PythonPDB
N
Region
N
RegionalScoring
N
ScoreAnalysis
N
SQLPDB
N
Structure
►
N
tools
N
analysis
N
general_tools
N
input
N
interfaces
N
loops
N
output
N
protocols
N
sequence
N
pyrosetta_toolkit
N
tests
►
N
window_main
►
N
frames
N
InputFrame
N
OutputFrame
N
QuickProtocolsFrame
N
SimpleAnalysisFrame
N
global_variables
►
N
IO
N
GUIInput
N
GUIOutput
N
SessionIO
N
menu
►
N
window_modules
►
N
clean_pdb
N
FixPDBWindow
►
N
design
N
ResfileDesignWindow
►
N
full_control
N
FullControlWindow
►
N
insert_bfactor
N
InsertBFactor
►
N
interactive_terminal
N
interactive_terminal
►
N
ligand_ncaa_ptm_manager
N
ligand_ncaa_ptm_manager
►
N
options_system
N
OptionSystemManager
►
N
protocol_builder
N
ProtocolBuilder
►
N
pymol_integration
N
PyMOL
►
N
scorefunction
N
ScoreFxnControl
►
N
vicinity_options
N
vicinity_window
►
N
surface_docking
N
append_data
N
constraints
N
movers
N
surf_param
N
surface_docking
►
N
apps
►
N
public1
►
N
scenarios
N
chemically_conjugated_docking
N
arls
N
arls_impl
N
assign_charges
►
N
basic
Tags used to tag messeges sent by MPI functions used to decide whether a slave is requesting a new job id or flagging as job as being a bad input
►
N
database
N
insert_statement_generator
N
schema_generator
N
datacache
N
gpu
N
mpi
►
N
options
►
N
OptionKeys
N
AnchoredPDBCreator
►
N
resource_manager
N
fallback_configuration
N
locator
►
N
sampling
N
orientations
N
svd
N
best_ifaceE
N
boost
►
N
boost_adaptbx
N
python
N
BuildBindings
N
BuildPackagedBindings
N
calccontacts
N
clean_pdb_keep_ligand
N
compare_times
N
ContactMap
N
contacts
N
coordlib
►
N
core
►
N
options
N
OptionKeys
N
dddm
►
N
demo
N
D010_Pose_structure
N
D020_Pose_scoring
N
D030_Fold_tree
N
D040_Movemap
N
D050_Packer_task
N
D060_Folding
N
D070_Refinement
N
D080_Loop_modeling
N
D090_Ala_scan
N
D100_Docking
N
D110_DNA_interface
N
D120_Ligand_interface
N
devel
N
docking
N
Equations
N
exclude
N
extract_scores_and_constraints
N
fragment
N
get_scores
N
hbs_design
►
N
io
N
silent
N
IO
N
loadPDB
N
local
N
loops
N
loops_kic
N
make_amb_constr
N
make_static_database
N
make_symmdef_file_denovo
N
make_templates
N
mp_ddG
N
mrlo
►
N
numeric
Unit headers
N
alignment
►
N
constants
N
d
N
f
N
ld
N
r
N
conversions
N
coordinate_fitting
N
crick_equations
N
deriv
N
expression_parser
N
fourier
►
N
geometry
N
hashing
N
histograms
►
N
interpolation
►
N
periodic_range
N
full
N
half
N
spline
N
kdtree
►
N
kinematic_closure
N
radians
N
linear_algebra
N
model_quality
N
nls
N
random
N
statistics
►
N
ObjexxFCL
N
bit
N
format
N
Fortran
►
N
internal
N
ObserverMediator
N
oop_design
N
options
N
options_class
N
options_rosetta
N
pdb_to_molfile
N
PDBInfo
N
peptoid_design
N
PhiPsi
►
N
platform
Fixed size types
N
file
N
PlotSurfaceContactMap
N
pose
N
predict_ddG
►
N
protocols
N
pmut_scan
N
prune_atdiff_top5pct
N
PyMOL_demo
N
PyMOLPyRosettaServer
N
revert_app
N
rosetta_scripts
N
score_app
►
N
scoring
N
constraints
N
sequence_recovery
N
setup
N
sidechain_cst_3
►
N
src
N
basic
►
N
core
N
fragment
N
io
N
pose
N
initialization
N
logging_support
N
numeric
►
N
protocols
N
antibody
N
canonical_sampling
N
environment
N
jd2
N
loops
N
rigid
N
rosetta_scripts
N
simple_filters
N
PyMolLink
N
utility
N
task
N
task_operations
►
N
test
N
G000_Main_GUI
N
G100_Functions_Input
N
G101_Functions_Output
N
G102_Functions_General
N
G103_Functions_Analysis
N
G104_Functions_Sequence
N
G200_Module_Region
N
G201_Module_Structure
N
G202_Module_PythonPDB
N
G203_Module_SQLPDB
N
G204_Module_ScoreAnalysis
N
G205_Module_RegionalScoring
N
T000_Imports
N
T005_Bindings
N
T007_TracerIO
N
T010_LoadPDB
N
T100_Basic
N
T150_PyMOL_Integration
N
T200_Scoring
N
T220_AtomAtomPairEnergies
N
T250_Constraints
N
T400_Refinement
N
T500_Packing
N
T600_Docking
N
T650_LoopsKIC
N
T660_LoopBuilding
N
T700_FoldTree
N
T800_ClassicRelax
N
T850_SubClassing
N
T860_SubClassing_EnergyMethods
N
T870_SubClassing_EnergyMethods2
N
T880_Other
N
Workshop2test
N
Workshop3test
N
Workshop4test
N
Workshop5test
N
Workshop6test
N
Workshop7test
N
Workshop8test
N
Workshop9_my_shapes
N
Workshop9test
N
TestBindings
►
N
tests
N
test_basic
►
N
toolbox
N
adjust_library_path
N
cleaning
N
extract_coords_pose
N
generate_resfile
N
load_ligand
N
make_rna_rosetta_ready
N
mutants
N
rcsb
N
structural_alignment
►
N
tools
N
CppParser
N
dox_extract
N
doxygen
N
DoxygenExtractorPyPP
N
usec
►
N
utility
Unresizable vector whose size is known at compile time, which may be allocated on the stack, and which indexes from 0
N
excn
N
factory
N
file
N
graph
►
N
io
N
ic
N
mpi_stream
N
oc
►
N
json_spirit
N
internal_
►
N
keys
N
lookup
N
libsvm
►
N
options
►
N
OptionKeys
►
N
options
Option
display option keys
N
table
N
pointer
N
py
N
serialization
N
signals
N
sql_database
N
tag
N
thread
N
tools
N
vall
►
N
yaml
N
composer
N
constructor
N
cyaml
N
dumper
N
emitter
N
error
N
events
N
loader
N
nodes
N
parser
N
reader
N
representer
N
resolver
N
scanner
N
serializer
N
tokens
►
N
zlib_stream
N
detail
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