PhiPsi Namespace Reference

Classes
class	ATOMinfo

Functions
def	load
def	partner
def	coordinates
def	backbone
def	CA
def	hbond_record
def	vector
def	length
def	unit_vector
def	dot_product
def	cross_product
def	angle
def	scalar_triple_product
def	PhiPsi
def	SecondaryStructure
def	MAIN

Variables
list	pdb = argv[1]

Function Documentation

def PhiPsi.angle	(		vector1,
			vector2
	)

Definition at line 171 of file PhiPsi.py.

References dot_product(), length(), and unit_vector().

Referenced by PhiPsi().

def PhiPsi.backbone

(

pdb

)

Definition at line 75 of file PhiPsi.py.

Referenced by PhiPsi().

def PhiPsi.CA

(

pdb

)

Definition at line 84 of file PhiPsi.py.

Referenced by MAIN(), and SecondaryStructure().

def PhiPsi.coordinates

(

pdb

)

Definition at line 60 of file PhiPsi.py.

Referenced by PhiPsi().

def PhiPsi.cross_product	(		vector1,
			vector2
	)

Definition at line 163 of file PhiPsi.py.

Referenced by PhiPsi(), and scalar_triple_product().

def PhiPsi.dot_product	(		vector1,
			vector2
	)

Definition at line 158 of file PhiPsi.py.

Referenced by angle(), and scalar_triple_product().

def PhiPsi.hbond_record

(

pdb

)

Definition at line 93 of file PhiPsi.py.

References ObjexxFCL.len(), and utility.split().

Referenced by SecondaryStructure().

def PhiPsi.length

(

vector

)

Definition at line 148 of file PhiPsi.py.

Referenced by angle().

def PhiPsi.load

(

file

)

Definition at line 39 of file PhiPsi.py.

References basic::database.open(), and ObjexxFCL.strip().

Referenced by MAIN(), PhiPsi(), and SecondaryStructure().

def PhiPsi.MAIN

(

pdb

)

Definition at line 376 of file PhiPsi.py.

References CA(), ObjexxFCL.len(), load(), basic::database.open(), partner(), and SecondaryStructure().

def PhiPsi.partner

(

pdb

)

Definition at line 47 of file PhiPsi.py.

Referenced by MAIN(), PhiPsi(), and SecondaryStructure().

def PhiPsi.PhiPsi

(

pdb

)

Definition at line 185 of file PhiPsi.py.

References angle(), backbone(), coordinates(), cross_product(), ObjexxFCL.len(), load(), partner(), scalar_triple_product(), and vector().

def PhiPsi.scalar_triple_product	(		vector1,
			vector2,
			vector3
	)

Definition at line 178 of file PhiPsi.py.

References cross_product(), and dot_product().

Referenced by PhiPsi().

def PhiPsi.SecondaryStructure

(

pdb

)

Definition at line 228 of file PhiPsi.py.

References ObjexxFCL.abs(), CA(), hbond_record(), ObjexxFCL.len(), load(), min(), and partner().

Referenced by MAIN().

def PhiPsi.unit_vector	(		vector,
			length
	)

Definition at line 153 of file PhiPsi.py.

Referenced by angle().

def PhiPsi.vector	(		pointA,
			pointB
	)

Definition at line 140 of file PhiPsi.py.

Referenced by PhiPsi().

Variable Documentation

list PhiPsi.pdb = argv[1]

Definition at line 389 of file PhiPsi.py.