contacts Namespace Reference

Variables
tuple	Nargs = len(sys.argv)
string	parserule = 'all'
string	output = 'list'
string	mode = 'fullatom'
string	dest = 'print'
list	arglist = sys.argv[1:Nargs+1]
	pdb = arg
tuple	contactObject = calccontacts.contactProtein(mode)

Variable Documentation

list contacts.arglist = sys.argv[1:Nargs+1]

Definition at line 35 of file contacts.py.

tuple contacts.contactObject = calccontacts.contactProtein(mode)

Definition at line 52 of file contacts.py.

string contacts.dest = 'print'

Definition at line 33 of file contacts.py.

tuple contacts.mode = 'fullatom'

Definition at line 32 of file contacts.py.

Referenced by basic::database.get_db_session(), main(), my_main(), and basic::database.parse_database_connection().

tuple contacts.Nargs = len(sys.argv)

Definition at line 6 of file contacts.py.

tuple contacts.output = 'list'

Definition at line 31 of file contacts.py.

Referenced by numeric::Calculator.compute(), numeric.FArray_to_vector_of_xyzvectors(), main(), match_main(), numeric.operator<<(), save_per_residue_scores(), numeric::xyzVector< core::Real >.show(), numeric::xyzMatrix< T >.show(), numeric.vector_of_xyzvectors_to_FArray(), and numeric.xyzmatrix_to_FArray().

tuple contacts.parserule = 'all'

Definition at line 30 of file contacts.py.

contacts.pdb = arg

Definition at line 38 of file contacts.py.

Referenced by create_base_pair_step_database_test(), cs_rosetta_rna_pdb(), fill_optional_options(), main(), match_main(), mg_modeler_test(), output_packstat(), output_packstat_pdb(), output_single_motif(), predict_chem_map_test(), basic::options.process(), register_options(), rhiju_pdbstats(), rna_fullatom_minimize_test(), run(), and PDB_IOBenchmark.setUp().