Classes
class	FileName
	File name class supporting Windows and UN*X/Linux format names. More...

class	PathName
	Path name class supporting Windows and UN*X/Linux format names. More...

Functions
bool	file_exists (std::string const &path)
	Does File Exist? More...

bool	is_directory (std::string const &path)
	Is the given path a directory? More...

int	file_delete (std::string const &path)
	Delete File. More...

std::string	file_extension (std::string const &filename)
	Extension of a File Name. More...

std::string	file_basename (std::string const &filename)
	Basename of a File Name. More...

long	file_size (std::string const &filename)
	Platform independent way of getting file size. More...

bool	create_blank_file (std::string const &blank_file)
	Create a blank file if it doesn't already exist. More...

std::string	create_temp_filename (std::string const &dir, std::string const &prefix)
	Find an unused random tempfile name with a given prefix (which may include a directory) More...

bool	create_directory (std::string const &dir_path)
	Create a directory if it doesn't already exist. More...

bool	create_directory_recursive (std::string const &dir_path)
	Create a directory and its parent directories if they doesn't already exist. More...

bool	trytry_ifstream_open (std::ifstream &ifstream_, std::string const &name, std::ios_base::openmode open_mode)
	Try to open file a few times just in case it is locked (from BOINC LIB) More...

bool	trytry_ofstream_open (std::ofstream &ofstream_, std::string const &name, std::ios_base::openmode open_mode)
	Try to open file a few times just in case it is locked (from BOINC LIB) More...

int	list_dir (std::string dir, utility::vector1< std::string > &files)

FileName	combine_names (utility::vector1< std::string > file_name_strings)

std::istream &	operator>> (std::istream &stream, FileName &name)
	Input from stream. More...

std::ostream &	operator<< (std::ostream &stream, FileName const &name)
	Output to stream. More...

bool	char_equali (char c, char d)
	Characters equal case-insensitively? More...

bool	equali (std::string const &s, std::string const &t)
	Strings equal case-insensitively? More...

bool	operator== (FileName const &name1, FileName const &name2)
	FileName == FileName. More...

bool	operator!= (FileName const &name1, FileName const &name2)
	FileName != FileName. More...

bool	operator< (FileName const &name1, FileName const &name2)
	FileName < FileName. More...

bool	operator<= (FileName const &name1, FileName const &name2)
	FileName <= FileName. More...

bool	operator>= (FileName const &name1, FileName const &name2)
	FileName >= FileName. More...

bool	operator> (FileName const &name1, FileName const &name2)
	FileName > FileName. More...

long	gzip (std::string const &uncompressedfile, bool overwrite)
	gzip: file compression More...

long	gunzip (std::string const &compressedfile, bool overwrite)
	gunzip: file decompression More...

std::istream &	operator>> (std::istream &stream, PathName &name)
	Input from stream. More...

std::ostream &	operator<< (std::ostream &stream, PathName const &name)
	Output to stream. More...

bool	operator== (PathName const &name1, PathName const &name2)
	PathName == PathName. More...

bool	operator!= (PathName const &name1, PathName const &name2)
	PathName != PathName. More...

bool	operator< (PathName const &name1, PathName const &name2)
	PathName < PathName. More...

bool	operator<= (PathName const &name1, PathName const &name2)
	PathName <= PathName. More...

bool	operator>= (PathName const &name1, PathName const &name2)
	PathName >= PathName. More...

bool	operator> (PathName const &name1, PathName const &name2)
	PathName > PathName. More...

Function Documentation

bool utility::file::char_equali	(	char	c,
		char	d
	)

inline

Characters equal case-insensitively?

Definition at line 156 of file FileName.cc.

Referenced by equali().

FileName utility::file::combine_names ( utility::vector1< std::string > file_name_strings )

Definition at line 497 of file file_sys_util.cc.

References begin.

bool utility::file::create_blank_file ( std::string const & blank_file )

Create a blank file if it doesn't already exist.

Definition at line 218 of file file_sys_util.cc.

References utility::io::oc::cerr, utility::io::oc::cout, trytry_ofstream_open(), and utility_exit.

bool utility::file::create_directory ( std::string const & dir_path )

Create a directory if it doesn't already exist.

Code is based on a discussion on this web site:

http://www.brainbell.com/tutorials/C++/Creating_A_Directory.htm

On non-Windows systems, the permissions are solely determined by the umask. If directory creation is successful, the function returns true.

*** Currently untested on Windows! If you find it works, remove this warning. Thanks. ***

Definition at line 295 of file file_sys_util.cc.

Referenced by create_directory_recursive(), and RunPepSpec().

bool utility::file::create_directory_recursive ( std::string const & dir_path )

Create a directory and its parent directories if they doesn't already exist.

Based on the above create_directory() function. If directory creation is successful or the directory already exists, the function returns true.

*** Currently untested on Windows! If you find it works, remove this warning. Thanks. ***

Definition at line 318 of file file_sys_util.cc.

References create_directory(), utility::file::PathName::name(), utility::file::PathName::parent(), and loops_kic::success.

Referenced by basic::database::find_cache_file(), and write_base_pair_step_to_silent_struct().

std::string utility::file::create_temp_filename	(	std::string const &	dir,
		std::string const &	prefix
	)

Find an unused random tempfile name with a given prefix (which may include a directory)

Definition at line 237 of file file_sys_util.cc.

References app.surface_docking.surface_docking::dir.

Referenced by basic::database::find_cache_file().

bool utility::file::equali	(	std::string const &	s,
		std::string const &	t
	)

inline

Strings equal case-insensitively?

Definition at line 165 of file FileName.cc.

References char_equali(), and ObjexxFCL::equal().

Referenced by utility::file::PathName::equal(), and utility::file::FileName::equal().

std::string utility::file::file_basename ( std::string const & filename )

Basename of a File Name.

Prefix of a file name.

Definition at line 178 of file file_sys_util.cc.

References utility::filename().

int utility::file::file_delete ( std::string const & path )

Delete File.

Delete file.

Definition at line 131 of file file_sys_util.cc.

References file_exists(), and utility::rand_sleep().

Referenced by basic::database::find_cache_file(), gunzip(), gzip(), and main().

bool utility::file::file_exists ( std::string const & path )

Does File Exist?

Does file exist?

Definition at line 89 of file file_sys_util.cc.

References utility::Inline_File_Provider::file_exists(), and utility::SingletonBase< Inline_File_Provider >::get_instance().

Referenced by composite_sequences_from_cmd_line(), file_delete(), file_size(), filter_combine_long_loop(), basic::database::find_cache_file(), basic::database::full_name(), utility::io::get_lines_from_file_data(), gunzip(), gzip(), import_and_dump_pdb(), main(), utility::io::ozstream::open_append_if_existed(), poses_from_cmd_line(), sequences_from_cmd_line(), swa_rna_cluster(), trytry_ifstream_open(), trytry_ofstream_open(), and write_base_pair_step_to_silent_struct().

std::string utility::file::file_extension ( std::string const & filename )

Extension of a File Name.

Extension of a file name.

Definition at line 153 of file file_sys_util.cc.

Referenced by basic::resource_manager::locator::FileStream::FileStream(), gunzip(), gzip(), utility::io::izstream::open(), utility::io::ozstream::open(), and utility::io::ozstream::open_append().

long utility::file::file_size ( std::string const & filename )

Platform independent way of getting file size.

File size.

Definition at line 193 of file file_sys_util.cc.

References utility::io::oc::cerr, end, tools.CppParser::file_, file_exists(), and trytry_ifstream_open().

Referenced by gzip().

long utility::file::gunzip	(	std::string const &	compressedfile,
		bool	overwrite
	)

gunzip: file decompression

Definition at line 139 of file gzip_util.cc.

References utility::io::oc::cerr, utility::io::oc::cout, file_delete(), file_exists(), file_extension(), utility::io::ocstream::rdbuf(), and trytry_ofstream_open().

long utility::file::gzip	(	std::string const &	uncompressedfile,
		bool	overwrite
	)

gzip: file compression

Definition at line 42 of file gzip_util.cc.

References utility::io::oc::cerr, utility::io::oc::cout, file_delete(), file_exists(), file_extension(), file_size(), utility::io::ocstream::rdbuf(), and trytry_ifstream_open().

Referenced by utility::exit(), and main().

bool utility::file::is_directory ( std::string const & path )

Is the given path a directory?

Is the file a directory?

Definition at line 119 of file file_sys_util.cc.

References S_ISDIR.

Referenced by trytry_ifstream_open().

int utility::file::list_dir	(	std::string	dir,
		utility::vector1< std::string > &	files
	)

Definition at line 462 of file file_sys_util.cc.

bool utility::file::operator!=	(	PathName const &	name1,
		PathName const &	name2
	)

PathName != PathName.

Definition at line 243 of file PathName.hh.

References utility::file::PathName::equal().

bool utility::file::operator!=	(	FileName const &	name1,
		FileName const &	name2
	)

FileName != FileName.

Definition at line 423 of file FileName.hh.

References utility::file::FileName::equal().

bool utility::file::operator<	(	PathName const &	name1,
		PathName const &	name2
	)

PathName < PathName.

Definition at line 253 of file PathName.hh.

bool utility::file::operator<	(	FileName const &	name1,
		FileName const &	name2
	)

FileName < FileName.

Definition at line 433 of file FileName.hh.

std::ostream& utility::file::operator<<	(	std::ostream &	stream,
		FileName const &	name
	)

Output to stream.

Definition at line 87 of file FileName.cc.

References utility::file::FileName::name().

std::ostream& utility::file::operator<<	(	std::ostream &	stream,
		PathName const &	name
	)

Output to stream.

Definition at line 103 of file PathName.cc.

References utility::file::PathName::name().

bool utility::file::operator<=	(	PathName const &	name1,
		PathName const &	name2
	)

PathName <= PathName.

Definition at line 263 of file PathName.hh.

bool utility::file::operator<=	(	FileName const &	name1,
		FileName const &	name2
	)

FileName <= FileName.

Definition at line 443 of file FileName.hh.

bool utility::file::operator==	(	PathName const &	name1,
		PathName const &	name2
	)

PathName == PathName.

Definition at line 233 of file PathName.hh.

References utility::file::PathName::equal().

bool utility::file::operator==	(	FileName const &	name1,
		FileName const &	name2
	)

FileName == FileName.

Definition at line 413 of file FileName.hh.

References utility::file::FileName::equal().

bool utility::file::operator>	(	PathName const &	name1,
		PathName const &	name2
	)

PathName > PathName.

Definition at line 283 of file PathName.hh.

bool utility::file::operator>	(	FileName const &	name1,
		FileName const &	name2
	)

FileName > FileName.

Definition at line 463 of file FileName.hh.

bool utility::file::operator>=	(	PathName const &	name1,
		PathName const &	name2
	)

PathName >= PathName.

Definition at line 273 of file PathName.hh.

bool utility::file::operator>=	(	FileName const &	name1,
		FileName const &	name2
	)

FileName >= FileName.

Definition at line 453 of file FileName.hh.

std::istream& utility::file::operator>>	(	std::istream &	stream,
		FileName &	name
	)

Input from stream.

Definition at line 76 of file FileName.cc.

References utility::file::FileName::assign().

std::istream& utility::file::operator>>	(	std::istream &	stream,
		PathName &	name
	)

Input from stream.

Definition at line 92 of file PathName.cc.

References utility::file::PathName::assign().

bool utility::file::trytry_ifstream_open	(	std::ifstream &	ifstream_,
		std::string const &	name,
		std::ios_base::openmode	open_mode
	)

Try to open file a few times just in case it is locked (from BOINC LIB)

Try to open file for read a few times just in case it is locked (from BOINC LIB)

Definition at line 337 of file file_sys_util.cc.

References file_exists(), is_directory(), and utility::rand_sleep().

Referenced by file_size(), gzip(), utility::io::izstream::open(), and utility::io::izstream::open_ifstream().

bool utility::file::trytry_ofstream_open	(	std::ofstream &	ofstream_,
		std::string const &	name,
		std::ios_base::openmode	open_mode
	)

Try to open file a few times just in case it is locked (from BOINC LIB)

Try to open file for write a few times just in case it is locked (from BOINC LIB)

Definition at line 404 of file file_sys_util.cc.

References file_exists(), and utility::rand_sleep().

Referenced by create_blank_file(), gunzip(), utility::io::ozstream::open(), and utility::io::ozstream::open_append().

Classes

Functions

Function Documentation