fldsgn → core Relation

File in src/protocols/fldsgn	Includes file in src/core
potentials / AACompositionEnergy.cc	scoring / EnergyMap.hh
potentials / AACompositionEnergy.cc	scoring / methods / EnergyMethod.hh
potentials / AACompositionEnergy.cc	pose / Pose.hh
potentials / AACompositionEnergy.cc	conformation / Residue.hh
potentials / AACompositionEnergy.cc	scoring / ScoreType.hh
potentials / AACompositionEnergy.hh	chemical / AA.hh
potentials / AACompositionEnergy.hh	scoring / methods / ContextDependentOneBodyEnergy.hh
potentials / AACompositionEnergy.hh	id / DOF_ID.fwd.hh
potentials / AACompositionEnergy.hh	scoring / EnergyMap.fwd.hh
potentials / AACompositionEnergy.hh	scoring / methods / EnergyMethod.fwd.hh
potentials / AACompositionEnergy.hh	pose / Pose.fwd.hh
potentials / AACompositionEnergy.hh	scoring / ScoreFunction.fwd.hh
potentials / AACompositionEnergy.hh	scoring / ScoreType.hh
potentials / AACompositionEnergy.hh	id / TorsionID.fwd.hh
potentials / AACompositionEnergy.hh	types.hh
potentials / AACompositionEnergyCreator.hh	scoring / methods / EnergyMethodCreator.hh
potentials / AACompositionEnergyCreator.hh	scoring / methods / EnergyMethodOptions.fwd.hh
potentials / AACompositionEnergyCreator.hh	scoring / ScoreType.hh
topology / BB_Pos.cc	pose / Pose.hh
topology / BB_Pos.cc	conformation / Residue.hh
topology / BB_Pos.hh	pose / Pose.fwd.hh
topology / BB_Pos.hh	chemical / ResidueType.fwd.hh
topology / BB_Pos.hh	types.hh
topology / BetaAlphaBetaMotif.cc	types.hh
topology / BetaAlphaBetaMotif.hh	types.hh
BluePrintBDR.cc	chemical / AA.hh
BluePrintBDR.cc	scoring / constraints / Constraint.hh
BluePrintBDR.cc	scoring / constraints / ConstraintSet.hh
BluePrintBDR.cc	scoring / dssp / Dssp.hh
BluePrintBDR.cc	scoring / Energies.hh
BluePrintBDR.cc	kinematics / FoldTree.hh
BluePrintBDR.cc	import_pose / import_pose.hh
BluePrintBDR.cc	pose / PDBInfo.hh
BluePrintBDR.cc	pose / Pose.hh
BluePrintBDR.cc	chemical / ResidueTypeSet.hh
BluePrintBDR.cc	scoring / ScoreFunction.hh
BluePrintBDR.cc	scoring / ScoreFunctionFactory.hh
BluePrintBDR.cc	util / SwitchResidueTypeSet.hh
BluePrintBDR.cc	pose / symmetry / util.hh
BluePrintBDR.hh	scoring / dssp / Dssp.fwd.hh
BluePrintBDR.hh	pose / Pose.fwd.hh
BluePrintBDR.hh	scoring / ScoreFunction.fwd.hh
BluePrintBDR.hh	types.hh
CircularPermutation.cc	conformation / Conformation.hh
CircularPermutation.cc	kinematics / FoldTree.hh
CircularPermutation.cc	kinematics / MoveMap.hh
CircularPermutation.cc	pose / Pose.hh
CircularPermutation.cc	conformation / Residue.hh
CircularPermutation.cc	conformation / ResidueFactory.hh
CircularPermutation.cc	chemical / ResidueTypeSet.hh
CircularPermutation.cc	pose / symmetry / util.hh
CircularPermutation.cc	pose / util.hh
CircularPermutation.hh	kinematics / MoveMap.fwd.hh
CircularPermutation.hh	pose / Pose.fwd.hh
CircularPermutation.hh	types.hh
filters / CoreDunbrackFilter.cc	chemical / AA.hh
filters / CoreDunbrackFilter.cc	id / AtomID_Map.hh
filters / CoreDunbrackFilter.cc	scoring / Energies.hh
filters / CoreDunbrackFilter.cc	pose / Pose.hh
filters / CoreDunbrackFilter.cc	conformation / Residue.hh
filters / CoreDunbrackFilter.cc	scoring / sasa.hh
filters / CoreDunbrackFilter.cc	scoring / ScoreFunction.hh
filters / CoreDunbrackFilter.cc	scoring / ScoreFunctionFactory.hh
filters / CoreDunbrackFilter.cc	scoring / ScoreType.hh
filters / CoreDunbrackFilter.cc	types.hh
filters / CoreDunbrackFilter.cc	pose / util.hh
filters / CoreDunbrackFilter.cc	pose / util.tmpl.hh
filters / CoreDunbrackFilter.hh	pose / Pose.fwd.hh
filters / CoreDunbrackFilter.hh	scoring / ScoreFunction.fwd.hh
topology / DimerPairing.hh	types.hh
filters / FragQualFilter.cc	pose / metrics / CalculatorFactory.hh
filters / FragQualFilter.cc	pose / Pose.hh
filters / FragQualFilter.cc	types.hh
filters / FragQualFilter.hh	pose / Pose.fwd.hh
filters / HelixKinkFilter.cc	scoring / Energies.hh
filters / HelixKinkFilter.cc	scoring / EnergiesCacheableDataType.hh
filters / HelixKinkFilter.cc	pose / Pose.hh
filters / HelixKinkFilter.cc	conformation / Residue.hh
filters / HelixKinkFilter.cc	pose / selection.hh
filters / HelixKinkFilter.cc	types.hh
filters / HelixKinkFilter.hh	pose / Pose.fwd.hh
topology / HelixPairing.hh	types.hh
filters / HelixPairingFilter.cc	scoring / dssp / Dssp.hh
filters / HelixPairingFilter.cc	pose / Pose.hh
filters / HelixPairingFilter.cc	types.hh
filters / HelixPairingFilter.hh	pose / Pose.fwd.hh
potentials / sspot / HSPairPotential.cc	scoring / Energies.hh
potentials / sspot / HSPairPotential.cc	scoring / EnergyGraph.hh
potentials / sspot / HSPairPotential.cc	kinematics / Jump.hh
potentials / sspot / HSPairPotential.cc	pose / Pose.hh
potentials / sspot / HSPairPotential.cc	conformation / Residue.hh
potentials / sspot / HSPairPotential.hh	scoring / EnergyGraph.fwd.hh
potentials / sspot / HSPairPotential.hh	pose / Pose.fwd.hh
potentials / sspot / HSPairPotential.hh	types.hh
topology / HSSTriplet.hh	types.hh
filters / HSSTripletFilter.cc	scoring / dssp / Dssp.hh
filters / HSSTripletFilter.cc	pose / Pose.hh
filters / HSSTripletFilter.cc	types.hh
filters / HSSTripletFilter.hh	pose / Pose.fwd.hh
filters / InterlockingAromaFilter.cc	chemical / AA.hh
filters / InterlockingAromaFilter.cc	chemical / AtomType.hh
filters / InterlockingAromaFilter.cc	scoring / dssp / Dssp.hh
filters / InterlockingAromaFilter.cc	scoring / Energies.hh
filters / InterlockingAromaFilter.cc	kinematics / Jump.hh
filters / InterlockingAromaFilter.cc	pose / Pose.hh
filters / InterlockingAromaFilter.cc	conformation / Residue.hh
filters / InterlockingAromaFilter.cc	scoring / TenANeighborGraph.hh
filters / InterlockingAromaFilter.hh	pose / Pose.fwd.hh
filters / InterlockingAromaFilter.hh	types.hh
MatchResidues.cc	id / AtomID_Map.hh
MatchResidues.cc	import_pose / import_pose.hh
MatchResidues.cc	pose / Pose.hh
MatchResidues.cc	chemical / ResidueType.hh
MatchResidues.cc	scoring / rms_util.hh
MatchResidues.cc	types.hh
MatchResidues.cc	pose / util.hh
MatchResidues.hh	pose / Pose.hh
MatchResidues.hh	pack / task / TaskFactory.fwd.hh
MatchResidues.hh	pack / task / operation / TaskOperation.fwd.hh
MatchResiduesMover.cc	import_pose / import_pose.hh
MatchResiduesMover.cc	pose / Pose.hh
MatchResiduesMover.cc	chemical / ResidueType.hh
MatchResiduesMover.cc	scoring / rms_util.hh
MatchResiduesMover.cc	types.hh
MatchResiduesMover.hh	pose / Pose.hh
MatchResiduesMover.hh	pack / task / TaskFactory.fwd.hh
MatchResiduesMover.hh	pack / task / operation / TaskOperation.fwd.hh
potentials / sspot / NatbiasHelicesSheetPotential.hh	types.hh
potentials / sspot / NatbiasHelixPairPotential.hh	pose / Pose.fwd.hh
potentials / sspot / NatbiasHelixPairPotential.hh	types.hh
potentials / sspot / NatbiasSecondaryStructureEnergy.cc	scoring / EnergyMap.hh
potentials / sspot / NatbiasSecondaryStructureEnergy.cc	scoring / methods / EnergyMethod.hh
potentials / sspot / NatbiasSecondaryStructureEnergy.cc	pose / Pose.hh
potentials / sspot / NatbiasSecondaryStructureEnergy.cc	conformation / Residue.hh
potentials / sspot / NatbiasSecondaryStructureEnergy.cc	scoring / ScoreType.hh
potentials / sspot / NatbiasSecondaryStructureEnergy.hh	scoring / EnergyMap.fwd.hh
potentials / sspot / NatbiasSecondaryStructureEnergy.hh	scoring / methods / EnergyMethod.fwd.hh
potentials / sspot / NatbiasSecondaryStructureEnergy.hh	pose / Pose.fwd.hh
potentials / sspot / NatbiasSecondaryStructureEnergy.hh	scoring / ScoreFunction.fwd.hh
potentials / sspot / NatbiasSecondaryStructureEnergy.hh	scoring / methods / WholeStructureEnergy.hh
potentials / sspot / NatbiasSecondaryStructureEnergyCreator.hh	scoring / methods / EnergyMethodCreator.hh
potentials / sspot / NatbiasSecondaryStructureEnergyCreator.hh	scoring / methods / EnergyMethodOptions.fwd.hh
potentials / sspot / NatbiasSecondaryStructureEnergyCreator.hh	scoring / ScoreType.hh
potentials / sspot / NatbiasStrandPairPotential.cc	scoring / Energies.hh
potentials / sspot / NatbiasStrandPairPotential.cc	scoring / EnergyGraph.hh
potentials / sspot / NatbiasStrandPairPotential.cc	kinematics / Jump.hh
potentials / sspot / NatbiasStrandPairPotential.cc	pose / Pose.hh
potentials / sspot / NatbiasStrandPairPotential.cc	conformation / Residue.hh
potentials / sspot / NatbiasStrandPairPotential.cc	scoring / SecondaryStructurePotential.hh
potentials / sspot / NatbiasStrandPairPotential.cc	scoring / symmetry / SymmetricEnergies.fwd.hh
potentials / sspot / NatbiasStrandPairPotential.cc	pose / symmetry / util.hh
potentials / sspot / NatbiasStrandPairPotential.hh	pose / Pose.fwd.hh
potentials / sspot / NatbiasStrandPairPotential.hh	types.hh
NcontactsCalculator.cc	conformation / Atom.hh
NcontactsCalculator.cc	chemical / AtomType.hh
NcontactsCalculator.cc	pose / Pose.hh
NcontactsCalculator.cc	conformation / Residue.hh
NcontactsCalculator.hh	conformation / Atom.fwd.hh
NcontactsCalculator.hh	pose / Pose.fwd.hh
NcontactsCalculator.hh	pose / metrics / PoseMetricCalculatorBase.hh
NcontactsCalculator.hh	conformation / Residue.fwd.hh
NcontactsCalculator.hh	types.hh
filters / NcontactsFilter.hh	pose / Pose.fwd.hh
filters / NcontactsFilter.hh	types.hh
filters / ParallelBetaPairingPreferenceFilter.cc	scoring / dssp / Dssp.hh
filters / ParallelBetaPairingPreferenceFilter.cc	pose / Pose.hh
filters / ParallelBetaPairingPreferenceFilter.cc	types.hh
filters / ParallelBetaPairingPreferenceFilter.hh	chemical / AA.hh
filters / ParallelBetaPairingPreferenceFilter.hh	pose / Pose.fwd.hh
filters / SecondaryStructureCountFilter.cc	scoring / dssp / Dssp.hh
filters / SecondaryStructureCountFilter.cc	pose / Pose.hh
filters / SecondaryStructureCountFilter.cc	conformation / Residue.hh
filters / SecondaryStructureCountFilter.cc	types.hh
filters / SecondaryStructureCountFilter.hh	pose / Pose.fwd.hh
filters / SecondaryStructureFilter.cc	sequence / ABEGOManager.hh
filters / SecondaryStructureFilter.cc	scoring / dssp / Dssp.hh
filters / SecondaryStructureFilter.cc	pose / Pose.hh
filters / SecondaryStructureFilter.cc	conformation / Residue.hh
filters / SecondaryStructureFilter.cc	types.hh
filters / SecondaryStructureFilter.hh	pose / Pose.fwd.hh
filters / SecondaryStructureHasResidueFilter.cc	scoring / dssp / Dssp.hh
filters / SecondaryStructureHasResidueFilter.cc	pack / task / PackerTask.hh
filters / SecondaryStructureHasResidueFilter.cc	pose / Pose.hh
filters / SecondaryStructureHasResidueFilter.cc	conformation / Residue.hh
filters / SecondaryStructureHasResidueFilter.cc	pack / task / TaskFactory.hh
filters / SecondaryStructureHasResidueFilter.cc	types.hh
filters / SecondaryStructureHasResidueFilter.hh	pose / Pose.fwd.hh
filters / SecondaryStructureHasResidueFilter.hh	pack / task / TaskFactory.fwd.hh
potentials / SetAACompositionPotential.cc	chemical / AA.hh
potentials / SetAACompositionPotential.cc	pose / Pose.hh
potentials / SetAACompositionPotential.cc	scoring / ScoreFunction.hh
potentials / SetAACompositionPotential.cc	scoring / ScoreType.hh
potentials / SetAACompositionPotential.hh	chemical / AA.hh
potentials / SetAACompositionPotential.hh	pose / Pose.fwd.hh
potentials / SetAACompositionPotential.hh	scoring / ScoreFunction.fwd.hh
potentials / SetAACompositionPotential.hh	types.hh
potentials / SetSecStructEnergies.cc	scoring / dssp / Dssp.hh
potentials / SetSecStructEnergies.cc	pose / Pose.hh
potentials / SetSecStructEnergies.cc	scoring / ScoreFunction.hh
potentials / SetSecStructEnergies.cc	scoring / ScoreFunctionFactory.hh
potentials / SetSecStructEnergies.cc	scoring / ScoreType.hh
potentials / SetSecStructEnergies.cc	conformation / symmetry / SymmetricConformation.hh
potentials / SetSecStructEnergies.cc	conformation / symmetry / SymmetryInfo.hh
potentials / SetSecStructEnergies.cc	pose / symmetry / util.hh
potentials / SetSecStructEnergies.hh	pose / Pose.fwd.hh
potentials / SetSecStructEnergies.hh	scoring / ScoreFunction.fwd.hh
potentials / SetSecStructEnergies.hh	conformation / symmetry / SymmetryInfo.fwd.hh
potentials / SetSecStructEnergies.hh	types.hh
topology / Sheet.cc	id / AtomID_Map.hh
topology / Sheet.cc	graph / DisjointSets.hh
topology / Sheet.cc	scoring / sasa.hh
topology / Sheet.cc	pose / util.hh
topology / Sheet.cc	pose / util.tmpl.hh
topology / Sheet.hh	pose / Pose.fwd.hh
topology / Sheet.hh	types.hh
SheetConstraintsRCG.cc	scoring / constraints / AngleConstraint.hh
SheetConstraintsRCG.cc	scoring / constraints / AtomPairConstraint.hh
SheetConstraintsRCG.cc	scoring / constraints / BoundConstraint.hh
SheetConstraintsRCG.cc	scoring / constraints / DihedralConstraint.hh
SheetConstraintsRCG.cc	pose / Pose.hh
SheetConstraintsRCG.cc	conformation / Residue.hh
SheetConstraintsRCG.cc	chemical / ResidueType.hh
SheetConstraintsRCG.cc	scoring / func / ScalarWeightedFunc.hh
SheetConstraintsRCG.cc	id / SequenceMapping.hh
SheetConstraintsRCG.cc	id / types.hh
SheetConstraintsRCG.hh	pose / Pose.fwd.hh
SheetConstraintsRCG.hh	types.hh
filters / SheetTopologyFilter.cc	scoring / dssp / Dssp.hh
filters / SheetTopologyFilter.cc	pose / Pose.hh
filters / SheetTopologyFilter.cc	types.hh
filters / SheetTopologyFilter.hh	pose / Pose.fwd.hh
topology / SS_Info2.cc	pose / Pose.hh
topology / SS_Info2.cc	chemical / ResidueType.hh
topology / SS_Info2.hh	types.hh
potentials / sspot / SSPairPotential.cc	scoring / Energies.hh
potentials / sspot / SSPairPotential.cc	scoring / EnergyGraph.hh
potentials / sspot / SSPairPotential.cc	kinematics / Jump.hh
potentials / sspot / SSPairPotential.cc	pose / Pose.hh
potentials / sspot / SSPairPotential.cc	conformation / Residue.hh
potentials / sspot / SSPairPotential.cc	scoring / SecondaryStructurePotential.hh
potentials / sspot / SSPairPotential.hh	scoring / EnergyGraph.fwd.hh
potentials / sspot / SSPairPotential.hh	pose / Pose.fwd.hh
potentials / sspot / SSPairPotential.hh	types.hh
topology / StrandPairing.hh	types.hh
topology / util.cc	id / AtomID_Map.hh
topology / util.cc	scoring / dssp / Dssp.hh
topology / util.cc	scoring / Energies.hh
topology / util.cc	scoring / EnergiesCacheableDataType.hh
potentials / sspot / util.cc	kinematics / FoldTree.hh
topology / util.cc	scoring / hbonds / HBondSet.hh
potentials / sspot / util.cc	kinematics / Jump.hh
topology / util.cc	pose / Pose.hh
potentials / sspot / util.cc	pose / Pose.hh
potentials / sspot / util.cc	conformation / Residue.hh
topology / util.cc	scoring / sasa.hh
topology / util.cc	scoring / dssp / StrandPairing.hh
topology / util.cc	pose / util.hh
topology / util.cc	pose / util.tmpl.hh
topology / util.hh	scoring / hbonds / HBondSet.fwd.hh
topology / util.hh	pose / Pose.fwd.hh
potentials / sspot / util.hh	pose / Pose.fwd.hh
topology / util.hh	types.hh
potentials / sspot / util.hh	types.hh