scoring Directory Reference

Directory dependency graph for scoring:

Directories
directory	aa_composition_energy
directory	aa_repeat_energy
directory	annealing
directory	bin_transitions
directory	carbohydrates
directory	carbon_hbonds
directory	constraints
directory	cryst
directory	custom_pair_distance
directory	disulfides
directory	dna
directory	dssp
directory	elec
directory	electron_density
directory	electron_density_atomwise
directory	etable
directory	facts
directory	fiber_diffraction
directory	func
directory	geometric_solvation
directory	hackaro
directory	hbonds
directory	interface_
directory	loop_graph
directory	magnesium
directory	memb_etable
directory	membrane
directory	methods
directory	mm
directory	motif
directory	nv
directory	orbitals
directory	packing
directory	packstat
directory	rna
directory	sasa
directory	saxs
directory	sc
directory	solid_surface
directory	sym_e
directory	symmetry
directory	trie
directory	vdwaals

Files
file	APBSWrapper.cc [code]
file	APBSWrapper.fwd.hh [code]
file	APBSWrapper.hh [code]
file	AtomVDW.cc [code]
file	AtomVDW.fwd.hh [code]
file	AtomVDW.hh [code]
file	CenHBPotential.cc [code]
file	CenHBPotential.fwd.hh [code]
file	CenHBPotential.hh [code]
file	CenRotEnvPairPotential.cc [code]
file	CenRotEnvPairPotential.fwd.hh [code]
file	CenRotEnvPairPotential.hh [code]
file	ChemicalShiftAnisotropy.cc [code]
	Uses NMR CSA for scoring (Bertram R et al J of Magn Reson 147, 9-16)
file	ChemicalShiftAnisotropy.fwd.hh [code]
file	ChemicalShiftAnisotropy.hh [code]
	Uses NMR CSA for scoring.
file	constants.hh [code]
	core::scoring package constants
file	ContextGraph.cc [code]
	Context graph class.
file	ContextGraph.fwd.hh [code]
	Context graph class forward declaration.
file	ContextGraph.hh [code]
	Context graph class declaration.
file	ContextGraphFactory.cc [code]
	Context graph class factory implementation.
file	ContextGraphFactory.fwd.hh [code]
	Context graph class factory forward declaration.
file	ContextGraphFactory.hh [code]
	Context graph factory class declaration.
file	ContextGraphTypes.hh [code]
file	DenseEnergyContainer.cc [code]
	A container for storing all-against-all energies as the upper triangle of a matrix.
file	DenseEnergyContainer.fwd.hh [code]
file	DenseEnergyContainer.hh [code]
	A container for storing all-against-all energies as the upper triangle of a matrix.
file	DerivVectorPair.cc [code]
file	DerivVectorPair.fwd.hh [code]
	Class for storing a pair of derivative vectors, f1 and f2, used in our internal-geometry minimization algorithm.
file	DerivVectorPair.hh [code]
	Serialization routines for the DerivVectorPair class.
file	DipolarCoupling.cc [code]
	Uses NMR DC for scoring (Bertram R et al J of Magn Reson 147, 9-16)
file	DipolarCoupling.fwd.hh [code]
file	DipolarCoupling.hh [code]
	Uses NMR DC for scoring.
file	DockingScoreFunction.cc [code]
file	DockingScoreFunction.fwd.hh [code]
	core::scoring::DockingScoreFunction forward declarations
file	DockingScoreFunction.hh [code]
file	Energies.cc [code]
	Energies class to store cached energies and track the residue neighbor relationships.
file	Energies.fwd.hh [code]
	Energies forward declarations header.
file	Energies.hh [code]
	Energies class.
file	EnergiesCacheableDataType.hh [code]
	enum for the DataCache within the Energies class
file	EnergyGraph.cc [code]
	Energy graph class implementation.
file	EnergyGraph.fwd.hh [code]
	Energy graph class forward declaration.
file	EnergyGraph.hh [code]
	Energy graph class declaration.
file	EnergyMap.cc [code]
	Vector of scores implementation.
file	EnergyMap.fwd.hh [code]
	Vector of scores forward declaration.
file	EnergyMap.hh [code]
	Vector of scores declaration.
file	EnvPairPotential.cc [code]
file	EnvPairPotential.fwd.hh [code]
file	EnvPairPotential.hh [code]
file	GenBornPotential.cc [code]
file	GenBornPotential.fwd.hh [code]
file	GenBornPotential.hh [code]
file	interpolation_util.hh [code]
file	LREnergyContainer.cc [code]
file	LREnergyContainer.fwd.hh [code]
file	LREnergyContainer.hh [code]
file	Membrane_FAPotential.cc [code]
	Membrane FA Potential - Class for Fullatom Membrane Scoring Methods.
file	Membrane_FAPotential.fwd.hh [code]
file	Membrane_FAPotential.hh [code]
file	MembranePotential.cc [code]
	Membrane Potential - Base Scoring Methods for LowRes Energy Function.
file	MembranePotential.fwd.hh [code]
	Membrane Potential - Base Scoring Methods for LowRes Energy Function.
file	MembranePotential.hh [code]
	Membrane Potential - Base Scoring Methods for LowRes Energy Function.
file	MembraneTopology.cc [code]
file	MembraneTopology.fwd.hh [code]
file	MembraneTopology.hh [code]
file	MinimizationData.cc [code]
	A container class for use by certain EnergyMethods during derivative and.
file	MinimizationData.fwd.hh [code]
	Forward declaration of the container class for use by certain EnergyMethods.
file	MinimizationData.hh [code]
	A container class for use by certain EnergyMethods during derivative and.
file	MinimizationGraph.cc [code]
	Minimization graph class implementation.
file	MinimizationGraph.fwd.hh [code]
	Minimization graph class forward declaration.
file	MinimizationGraph.hh [code]
	Minimization graph class declaration.
file	MinScoreScoreFunction.cc [code]
file	MinScoreScoreFunction.fwd.hh [code]
	core::scoring::MinScoreScoreFunction forward declarations
file	MinScoreScoreFunction.hh [code]
file	MultipoleElecPotential.cc [code]
file	MultipoleElecPotential.fwd.hh [code]
file	MultipoleElecPotential.hh [code]
file	NeighborList.cc [code]
file	NeighborList.fwd.hh [code]
	Foward declaration of NeighborList class and owning pointer typedefs.
file	NeighborList.hh [code]
file	NeighborList.tmpl.hh [code]
file	OmegaTether.cc [code]
	OmegaTether potential class implementation.
file	OmegaTether.fwd.hh [code]
	Omega Tether potential class forward delcaration.
file	OmegaTether.hh [code]
	OmegaTether potential class delcaration.
file	OneToAllEnergyContainer.cc [code]
	A container interface for storing and scoring long range energies.
file	OneToAllEnergyContainer.fwd.hh [code]
file	OneToAllEnergyContainer.hh [code]
	A container interface for storing and scoring long range energies.
file	P_AA.cc [code]
	Amino acid probability arrays and functions.
file	P_AA.fwd.hh [code]
file	P_AA.hh [code]
	Amino acid probability arrays and functions.
file	P_AA_ss.cc [code]
	Amino acid probability arrays and functions.
file	P_AA_ss.fwd.hh [code]
file	P_AA_ss.hh [code]
file	PairEPotential.cc [code]
	pairE knowledge-based potential class
file	PairEPotential.fwd.hh [code]
	pairE knowledge-based potential class forward delcaration
file	PairEPotential.hh [code]
file	PeptideBondedEnergyContainer.cc [code]
	A container interface long range energies for n->n+1 interactions only.
file	PeptideBondedEnergyContainer.fwd.hh [code]
file	PeptideBondedEnergyContainer.hh [code]
	A container interface long range energies for n->n+1 interactions only.
file	PoissonBoltzmannPotential.cc [code]
	PoissonBoltzmann potential class implementation.
file	PoissonBoltzmannPotential.fwd.hh [code]
	PoissonBoltzmann potential class forward delcaration.
file	PoissonBoltzmannPotential.hh [code]
	Poisson Boltzmann potential class delcaration.
file	ProQPotential.cc [code]
file	ProQPotential.fwd.hh [code]
	Membrane Potential.
file	ProQPotential.hh [code]
file	ProteinTorsion.hh [code]
	Ramachandran potential class delcaration.
file	Ramachandran.cc [code]
	Ramachandran potential class implementation.
file	Ramachandran.fwd.hh [code]
	Ramachandran potential class forward declaration.
file	Ramachandran.hh [code]
	Ramachandran potential class delcaration.
file	Ramachandran2B.cc [code]
	Neighbor-dependent Ramachandran potential class implementation.
file	Ramachandran2B.fwd.hh [code]
file	Ramachandran2B.hh [code]
	Neighbor-dependent Ramachandran potential class delcaration.
file	RamaPrePro.cc [code]
file	RamaPrePro.fwd.hh [code]
file	RamaPrePro.hh [code]
	RamaPrePro potential class delcaration.
file	ResidualDipolarCoupling.cc [code]
	Uses NMR RDC for scoring.
file	ResidualDipolarCoupling.fwd.hh [code]
file	ResidualDipolarCoupling.hh [code]
	Uses NMR RDC for scoring.
file	ResidualDipolarCoupling_Rohl.cc [code]
	Uses NMR RDC for scoring.
file	ResidualDipolarCoupling_Rohl.fwd.hh [code]
file	ResidualDipolarCoupling_Rohl.hh [code]
file	ResidueNeighborList.cc [code]
file	ResidueNeighborList.fwd.hh [code]
	Forward declaration of a container class for use by the Etable and FA_Elec classes for storing residue-pair level atom-neighbor information.
file	ResidueNeighborList.hh [code]
	A container class for use by the Etable and FA_Elec classes for storing lists of atom neighbors.
file	rms_util.cc [code]
	RMS stuff from rosetta++.
file	rms_util.hh [code]
file	rms_util.tmpl.hh [code]
file	sasa.cc [code]
	routines which calculate solvent accessible surface area
file	sasa.hh [code]
	routines which calculate solvent accessible surface area
file	ScoreFunction.cc [code]
	ScoreFunction class definition.
file	ScoreFunction.fwd.hh [code]
	core::scoring::ScoreFunction forward declarations
file	ScoreFunction.hh [code]
	Score function class.
file	ScoreFunctionFactory.cc [code]
file	ScoreFunctionFactory.hh [code]
file	ScoreFunctionInfo.cc [code]
	Score function class descriptor.
file	ScoreFunctionInfo.fwd.hh [code]
file	ScoreFunctionInfo.hh [code]
file	ScoreType.cc [code]
file	ScoreType.hh [code]
	Score type enumeration.
file	ScoreTypeManager.cc [code]
	Method definitions for ScoreTypeManager.
file	ScoreTypeManager.hh [code]
	Score type enumeration.
file	ScoringManager.cc [code]
	Scoring manager class.
file	ScoringManager.fwd.hh [code]
file	ScoringManager.hh [code]
	Scoring manager class header.
file	SecondaryStructurePotential.cc [code]
	Scoring manager class header.
file	SecondaryStructurePotential.fwd.hh [code]
file	SecondaryStructurePotential.hh [code]
file	SecondaryStructureWeights.cc [code]
file	SecondaryStructureWeights.hh [code]
file	SmoothEnvPairPotential.cc [code]
file	SmoothEnvPairPotential.fwd.hh [code]
file	SmoothEnvPairPotential.hh [code]
file	SplitUnfoldedTwoBodyPotential.cc [code]
	Reads in and stores the two body energies for each residue type for the split unfolded energy.
file	SplitUnfoldedTwoBodyPotential.fwd.hh [code]
file	SplitUnfoldedTwoBodyPotential.hh [code]
	Reads in and stores the two body energies for each residue type for the split unfolded energy.
file	SS_Info.cc [code]
file	SS_Info.fwd.hh [code]
	Data cache forward declarations for the secondary-structure based scores.
file	SS_Info.hh [code]
file	SS_Killhairpins_Info.cc [code]
file	SS_Killhairpins_Info.fwd.hh [code]
file	SS_Killhairpins_Info.hh [code]
	Scoring manager class header.
file	TenANeighborGraph.cc [code]
	Neighbor graph to represent for each residue the number of other residues within 10 Angstroms.
file	TenANeighborGraph.fwd.hh [code]
	Ten Angstrom Neighbor graph class forward declaration.
file	TenANeighborGraph.hh [code]
	Ten Angstrom Neighbor Graph class declaration.
file	TMscore.cc [code]
file	TMscore.hh [code]
	reimplementation of TMscore sequence-based structure superposition
file	TwelveANeighborGraph.cc [code]
	Neighbor graph to represent for each residue the number of other residues within 12 Angstroms.
file	TwelveANeighborGraph.fwd.hh [code]
	Twelve Angstrom Neighbor graph class forward declaration.
file	TwelveANeighborGraph.hh [code]
	Twelve Angstrom Neighbor Graph class declaration.
file	types.hh [code]
	core::scoring package type declarations
file	UnfoldedStatePotential.cc [code]
	Unfolded state energies based on energies of residues in fragments, definition file.
file	UnfoldedStatePotential.fwd.hh [code]
	Unfolded state energies based on energies of residues in fragments, forward declaration.
file	UnfoldedStatePotential.hh [code]
	Unfolded state energies based on energies of residues in fragments, declaration (header) file.
file	util.cc [code]
	Nonmember functions for evaluating some or all energy methods on residues or residue pairs.
file	util.hh [code]
	Nonmember functions for evaluating some or all energy methods on residues or residue pairs.
file	VdWTinkerPotential.cc [code]
file	VdWTinkerPotential.fwd.hh [code]
file	VdWTinkerPotential.hh [code]
file	WaterAdductHBondPotential.cc [code]
file	WaterAdductHBondPotential.fwd.hh [code]
file	WaterAdductHBondPotential.hh [code]