- c -

C : core::chemical::element , protocols::forge::build::SegmentInsertConnectionScheme
c2n : protocols::rigid
C_ALA : protocols::match
C_CAR : protocols::match
C_pi_sp2 : core::chemical::orbitals
Ca : core::chemical::element
CA : protocols::frag_picker
CALC_RMS : core::pose::full_model_info
camelid_last_loop : protocols::antibody
CAN_CONTROL : protocols::environment::claims
cart_bonded : core::scoring
cart_bonded_angle : core::scoring
cart_bonded_length : core::scoring
cart_bonded_lr : core::scoring::methods
cart_bonded_torsion : core::scoring
CAVEAT : core::io::pdb
CB : protocols::frag_picker
cbeta : core::scoring
cbeta_smooth : core::scoring
Cd : core::chemical::element
cd_1b : core::scoring::methods
cd_2b : core::scoring::methods
cd_lr_2b : core::scoring::methods
CDFr : protocols::fldsgn::topology
cdr_end : protocols::antibody
cdr_region : protocols::antibody
cdr_start : protocols::antibody
CDRClusterEnum_start : protocols::antibody::clusters
CDRClusterEnum_stop : protocols::antibody::clusters
CDRClusterEnum_total : protocols::antibody::clusters
CDRDefinitionEnum_start : protocols::antibody
CDRDefinitionEnum_total : protocols::antibody
CDRLandmarkEnum_total : protocols::antibody
CDRNameEnum_proto_start : protocols::antibody
CDRNameEnum_proto_total : protocols::antibody
CDRNameEnum_start : protocols::antibody
CDRNameEnum_total : protocols::antibody
Ce : core::chemical::element
CEN : protocols::frag_picker , protocols::kinmatch
CEN_ANG : protocols::kinmatch
CEN_AXS : protocols::kinmatch
CEN_AXS_ORI : protocols::kinmatch
CEN_DOCK_SCORE : core::conformation::symmetry
cen_env_smooth : core::scoring
cen_hb : core::scoring
cen_pair_smooth : core::scoring
cen_rot_cbeta : core::scoring
cen_rot_dun : core::scoring
cen_rot_env : core::scoring
cen_rot_pair : core::scoring
cen_rot_pair_ang : core::scoring
cen_rot_pair_dih : core::scoring
cenpack : core::scoring
cenpack_smooth : core::scoring
center : core::conformation::membrane
CENTROID_DISTANCE : protocols::stepwise::screener
centroid_disulfide_energy : core::scoring::methods
centroid_neighbor_graph : core::scoring
centroid_relax : protocols::antibody::design
Cf : core::chemical::element
CFr : protocols::fldsgn::topology
ch_bond : core::scoring
ch_bond_bb_bb : core::scoring
ch_bond_bb_sc : core::scoring
ch_bond_sc_sc : core::scoring
CHAIN_COLOR : protocols::viewer::graphics_states_param
chainbreak : core::scoring
chainID : protocols::loops
chco : core::scoring::rna::chemical_shift
CHI : core::chemical::rna , core::id , core::scoring::dna
CHI1 : core::scoring
CHI2 : core::scoring
CHI3 : core::scoring
CHI4 : core::scoring
CHI_ATOM : core::chemical
chothia : core::scoring::sasa
Chothia : protocols::antibody
Chothia_Scheme : protocols::antibody
chrg : core::scoring::rna::chemical_shift
ci_1b : core::scoring::methods
ci_2b : core::scoring::methods
ci_lr_2b : core::scoring::methods
CIF_file : core::import_pose
CIS : core::chemical::rna
CISPEP : core::io::pdb
Cl : core::chemical::element
CLEAR_IF_CACHING_FRAGMENTS : protocols::forge::components::VLB_VallMemoryUsage
Closest : protocols::indexed_structure_store::filters
Cm : core::chemical::element
CMCT : core::scoring::rna::data
Cn : core::chemical::element
Co : core::chemical::element
co : core::scoring
coarse_beadlj : core::scoring
coarse_fa_atr : core::scoring
coarse_fa_rep : core::scoring
coarse_fa_sol : core::scoring
coil : protocols::loops::loop_closure::ccd
COMB : protocols::stepwise::sampler
COMPND : core::io::pdb
CONECT : core::io::pdb
ConjugableBond : core::chemical
constant_constraint : core::scoring
constrained_optimization_weight_func : protocols::optimize_weights
constraints_lr : core::scoring::methods
CONTACTS : core::conformation::symmetry
coordinate_constraint : core::scoring
COPY_DOF : protocols::stepwise::sampler
CP_CROSSOVER_3 : core::scoring::etable::count_pair
CP_CROSSOVER_34 : core::scoring::etable::count_pair
CP_CROSSOVER_4 : core::scoring::etable::count_pair
CP_MULTIPLE_BONDS_OR_PSEUDOBONDS : core::scoring::etable::count_pair
CP_NO_BONDS : core::scoring::etable::count_pair
CP_ONE_BOND : core::scoring::etable::count_pair
CPK_COLOR : protocols::viewer::graphics_states_param
Cr : core::chemical::element
CriticalFailure : protocols::loops::loop_mover
CRYST1 : core::io::pdb
Cs : core::chemical::element
csa : core::scoring
csca : core::scoring::rna::chemical_shift
cst_res_data : core::scoring
cst_respair_data : core::scoring
cstJump : protocols::jumping
Cu : core::chemical::element
CUBIC : protocols::cryst
custom_atom_pair : core::scoring
cut_point : protocols::loops
CUTPOINT_OPEN : core::pose::full_model_info
CYS_C_ALPHA : core::scoring::disulfides
CYS_C_BETA : core::scoring::disulfides
CYS_CEN : core::scoring::disulfides
CYS_S_GAMMA : core::scoring::disulfides